PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A08G0299

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 262aa MW: 29876.5 Da PI: 8.0622

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A08G0299	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.1	9.8e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed+llv++v+ +G g+Wk+ +++ g+ R++k+c++rw +yl Gh_A08G0299 14 RGPWSPREDKLLVNYVQSHGEGNWKSLPKKAGLLRCGKSCRLRWMNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	53.5	5.7e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eEd+l+++++ +lG++ W++Ia +++ gRt++++k++w+ + Gh_A08G0299 67 RGNITPEEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNCH 111 7999****************.*****.*********977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.77	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.61E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	8.9E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	6.8E-17	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.6E-25	15	68	IPR009057	Homeodomain-like
CDD	cd00167	1.13E-11	16	61	No hit	No description
PROSITE profile	PS51294	26.007	62	116	IPR017930	Myb domain
SMART	SM00717	1.1E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	5.0E-15	67	109	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-26	69	116	IPR009057	Homeodomain-like
CDD	cd00167	2.09E-12	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MGRAPCCSKV GLHRGPWSPR EDKLLVNYVQ SHGEGNWKSL PKKAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI TPEEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNC HLSKRLLNQG 120 TDPNTRKKLS QQATNTRKNI SDTSKTFSER PKIHLPKPIR VTRSSFPRNQ SFELDNHQCN 180 ANTQAGGNPS SDYAYAADHG GENMRGFLAD DLDIQFECES TVLVSEDDSS SLEKLYEEYL 240 QILNQNEDDE MQLDSFAQSL LI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-26	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.105	0.0	boll\| ovule\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269\|PubMed:9839469}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:18541146, ECO:0000269\|PubMed:9839469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016717616.1	0.0	PREDICTED: myb-related protein 308-like
Swissprot	Q9S9K9	3e-67	MYB3_ARATH; Transcription factor MYB3
TrEMBL	A0A0B0MDX8	0.0	A0A0B0MDX8_GOSAR; Transcription factor MYB3-like protein
STRING	Gorai.004G044000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-69	myb domain protein 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Wada T,Hayashi N,Tominaga-Wada R Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1089372 [PMID:26339713] Wada T,Tominaga-Wada R CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression. Plant Sci., 2015. 241: p. 260-5 [PMID:26706076] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]