PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G0140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 28863.4 Da PI: 7.4225 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.5e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l+++++ +G g W+ +++ g++R++k+c++rw++yl Gh_A07G0140 14 KGAWTANEDQILKNYITIHGEGKWRDLPQKAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.4 | 2.6e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + eE+el+++++k+lG++ W++Ia +++ gRt++++k++w++ Gh_A07G0140 67 RGNISIEEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 678889****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.576 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.41E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.91E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.054 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.36E-7 | 80 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGRRPCCAKE GLNKGAWTAN EDQILKNYIT IHGEGKWRDL PQKAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SIEEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKRMQGQK 120 RNISPNTPQV SSHNVIRTKA VKCTKAVNVD TLDPKSETLV NSPSETPSSS AINEDNTNNN 180 SMDFLVDFDI NELLAFEYNA IPELYRTQNG GDKMGNNVAD NGEYSHGTEF CQAGEHLDLR 240 GLESYLNLED EWIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.8081 | 0.0 | boll| embryo| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Highly expressed from the very early stages of embryogenesis to the globular stage, decreases rapidly from the late heart-torpedo stage and did not persist after the completion of embryogenesis. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at a high level in immature siliques and at a lower level in flowers. Undetected in young seedlings, roots, leaves and inflorescence stems. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF336285 | 0.0 | AF336285.1 Gossypium hirsutum GHMYB38 (ghmyb38) mRNA, complete cds. | |||
GenBank | FJ198051 | 0.0 | FJ198051.1 Gossypium barbadense agamous-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016716893.1 | 0.0 | PREDICTED: transcription factor TT2-like | ||||
Refseq | XP_017627637.1 | 0.0 | PREDICTED: transcription factor TT2-like | ||||
Swissprot | Q9FJA2 | 3e-63 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A0B0PYE5 | 0.0 | A0A0B0PYE5_GOSAR; Transcription factor MYB3-like protein | ||||
TrEMBL | A0A1U8LTZ7 | 0.0 | A0A1U8LTZ7_GOSHI; Transcription factor TT2 | ||||
STRING | Gorai.001G015200.1 | 1e-174 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 3e-54 | myb domain protein 3 |