PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0416
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 450aa    MW: 47480.9 Da    PI: 6.8835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0416genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.2e-12246291555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Gh_A05G0416 246 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 291
                  99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.19E-13239295No hitNo description
SuperFamilySSF474595.37E-17239301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16243300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9246291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MQPCSREMQA MNSLLSPTQQ IPLQDLQPNG NSGTHQAQIH NPQFDPTSSH DDFLDQMLST  60
LPSCSWSDLK SPWDPPKSDE TPPSNHDNNV GFHYDEILAS KLRQHQINGG GGGTTAAMKM  120
MMQQQMLLPG RPIAAAGGGG LTMPLHNDIV DGSSFKSPNQ QGGEGSVQAL YNGFGAGSLH  180
GTNNQSPNQP QPFHHPQGGN MQTQSFGATA GTVMNQSQAS GSTTGGAPAQ PKQRVRARRG  240
QATDPHSIAE RLRRERIAER MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS  300
RLGGAAAVAP LVADMPSEGG DCVQTTAGGG GSLQRNSNGN QPSANNDSLT VTEHQVAKLM  360
EEDMGSAMQY LQRKGLCLMP ISLATAISTA TCHSRNPMIN KGSSSNHPLL QSNGDGPSSP  420
SMSVLTVQSA TMGNGGLDGS AKDAASVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250255RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.17430.0boll| leaf| ovule| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF8364323e-90KF836432.1 Gossypium hirsutum bHLH4 transcription factor (bHLH4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016750335.10.0PREDICTED: transcription factor bHLH69-like
TrEMBLA0A1U8PGQ20.0A0A1U8PGQ2_GOSHI; transcription factor bHLH69-like
STRINGGorai.009G055200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-75LJRHL1-like 1