PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS65703.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

NAC

Protein Properties

Length: 542aa MW: 60313.2 Da PI: 4.375

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS65703.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.1	6.9e-53	20	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 l+pGfrFhPtdeelv +yL++kv gk +++ ++i+++diyk+ePwdLp+ k+k+++ ewyfFs dkky +g+r+nrat++gyWk+tgkd++v++ k+ EPS65703.1 20 LAPGFRFHPTDEELVRYYLRRKVCGKGFRF-DAISDIDIYKAEPWDLPNfsKLKTRDLEWYFFSVLDKKYGNGSRTNRATERGYWKTTGKDRAVYH-KS 116 579************************9.99***********4358888888**********************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLv+++grapkg +t+Wvmheyrl EPS65703.1 117 LIVGMKKTLVYHNGRAPKGLRTNWVMHEYRL 147 99*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-62	17	170	IPR003441	NAC domain
PROSITE profile	PS51005	57.676	20	170	IPR003441	NAC domain
Pfam	PF02365	2.9E-27	22	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009644	Biological Process	response to high light intensity
GO:0009962	Biological Process	regulation of flavonoid biosynthetic process
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MESSATIKSE TRRSESSTML APGFRFHPTD EELVRYYLRR KVCGKGFRFD AISDIDIYKA 60 EPWDLPNFSK LKTRDLEWYF FSVLDKKYGN GSRTNRATER GYWKTTGKDR AVYHKSLIVG 120 MKKTLVYHNG RAPKGLRTNW VMHEYRLTDV DLDKAGIPQD AFVLCRIFQK SGSGPKNGER 180 YGAPFMEEEW ENDEVDQVPK VEAADTFDFD ADVYLDFHDL EEILESNASP FEDSTLVEET 240 AGSLNAAEQR SELYQPDVLS PPSDAKAVVV KHEFIGESSK TADPEKMDFS SDDYFFDSTA 300 NLPYGNGEII EGDNMPVPNV ETNSSPLDLL DEYLAFFDAN VDNTQEFGFD PSLAFGTPDF 360 MAPDLNQMLL PPEEPKGVAE GEDDSTIPKL FDDDAAAYVS DKLDSSTHDL ESPFVKRANR 420 MLGSFDAPPA FASEPSFSSK DSLSLNLLSG ASGSVRVTAG MIRISDGYDE ASAKYDDHSK 480 LNIVVSLGFC RGDDGSASLE SSVRILPGKA VAAISRSWFY FTCLCIVLFS ITIKLGMCVP 540 SK

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MESSATIKSE TRRSESSTML APGFRFHPTD EELVRYYLRR KVCGKGFRFD AISDIDIYKA  60
EPWDLPNFSK LKTRDLEWYF FSVLDKKYGN GSRTNRATER GYWKTTGKDR AVYHKSLIVG  120
MKKTLVYHNG RAPKGLRTNW VMHEYRLTDV DLDKAGIPQD AFVLCRIFQK SGSGPKNGER  180
YGAPFMEEEW ENDEVDQVPK VEAADTFDFD ADVYLDFHDL EEILESNASP FEDSTLVEET  240
AGSLNAAEQR SELYQPDVLS PPSDAKAVVV KHEFIGESSK TADPEKMDFS SDDYFFDSTA  300
NLPYGNGEII EGDNMPVPNV ETNSSPLDLL DEYLAFFDAN VDNTQEFGFD PSLAFGTPDF  360
MAPDLNQMLL PPEEPKGVAE GEDDSTIPKL FDDDAAAYVS DKLDSSTHDL ESPFVKRANR  420
MLGSFDAPPA FASEPSFSSK DSLSLNLLSG ASGSVRVTAG MIRISDGYDE ASAKYDDHSK  480
LNIVVSLGFC RGDDGSASLE SSVRILPGKA VAAISRSWFY FTCLCIVLFS ITIKLGMCVP  540
SK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-46	20	176	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-46	20	176	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-46	20	176	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-46	20	176	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-46	20	176	20	174	NAC domain-containing protein 19
3swm_B	2e-46	20	176	20	174	NAC domain-containing protein 19
3swm_C	2e-46	20	176	20	174	NAC domain-containing protein 19
3swm_D	2e-46	20	176	20	174	NAC domain-containing protein 19
3swp_A	2e-46	20	176	20	174	NAC domain-containing protein 19
3swp_B	2e-46	20	176	20	174	NAC domain-containing protein 19
3swp_C	2e-46	20	176	20	174	NAC domain-containing protein 19
3swp_D	2e-46	20	176	20	174	NAC domain-containing protein 19
4dul_A	2e-46	20	176	17	171	NAC domain-containing protein 19
4dul_B	2e-46	20	176	17	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00059	PBM	Transfer from AT5G04410	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076897.1	0.0	NAC domain-containing protein 53 isoform X1
TrEMBL	S8DRF3	0.0	S8DRF3_9LAMI; Nam-like protein 9
STRING	Migut.F01913.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3141	24	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10500.1	1e-107	NAC domain containing protein 53

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]