PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS59592.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 23902.8 Da PI: 9.5294 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.6 | 2.3e-21 | 23 | 73 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a++aa+++++g+ EPS59592.1 23 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGH 73 69*******.**********8...557**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.7E-15 | 23 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-23 | 23 | 81 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-33 | 23 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.17E-18 | 23 | 80 | No hit | No description |
PROSITE profile | PS51032 | 24.289 | 23 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-39 | 23 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MKEKENGEAA PAAKVSGGVK ELHYRGVRKR PWGRYAAEIR DPGKKSRVWL GTFDTAEEAA 60 RAYDAAAREF RGHKAKTNFP LPSEAAHSPS RSSTVESSSA DLKPRAPVEL DLTRRLGAGH 120 DTAVTVAHPA GYQFFRRQPA VAVLPTGQPV FFFQPLVQPA SYQIPAPTGS PLVQPASLPR 180 GGALISDSDT SSVVDENHYY DGSDPKKALN LDLNLPPPPD AP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-22 | 23 | 81 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 9e-22 | 23 | 81 | 5 | 64 | ATERF1 |
3gcc_A | 9e-22 | 23 | 81 | 5 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100355.1 | 6e-85 | ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q9LW49 | 3e-65 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | S8DJC3 | 1e-159 | S8DJC3_9LAMI; Ethylene response factor 3 | ||||
STRING | Migut.M00159.1.p | 9e-68 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 4e-26 | erf domain protein 9 |
Publications ? help Back to Top | |||
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