PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_39138_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 246aa MW: 28867 Da PI: 4.7372 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.1 | 4.9e-19 | 26 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd l+ +v+++G g+W+++ar g++Rt+k+c++rw++yl Cotton_A_39138_BGI-A2_v1.0 26 KGQWTEEEDSMLKAYVTLHGEGHWNSVARFSGLRRTGKSCRLRWLNYL 73 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.5 | 1e-15 | 79 | 122 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ +G++ W++Ia++++ gRt++++k++w++ Cotton_A_39138_BGI-A2_v1.0 79 RGSITLEEQLLIIQLHSVWGNR-WSKIAEHLP-GRTDNEIKNYWRT 122 7889******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-22 | 21 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.602 | 21 | 77 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-30 | 23 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-15 | 25 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-16 | 26 | 73 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.07E-10 | 29 | 73 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-22 | 77 | 127 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.747 | 78 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 79 | 122 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.77E-10 | 83 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEVYERGFFS ISESGHQIEE EMDVRKGQWT EEEDSMLKAY VTLHGEGHWN SVARFSGLRR 60 TGKSCRLRWL NYLRPAIRRG SITLEEQLLI IQLHSVWGNR WSKIAEHLPG RTDNEIKNYW 120 RTKVQKQAKK LECDVNSRKF RDALRYEYIP RLIEQISRAK QESPSGQLTY GNETESVQVD 180 QSLLPESSSE IQVTYGSTVA ETWGIDEQSN SNGWLGGGDY WMESEWCEEN IWFLQQQLYD 240 DEDNEI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 23 | 128 | 4 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX609428 | 1e-103 | JX609428.1 Gossypium hirsutum clone NBRI_GE50656 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636852.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q10MB4 | 6e-69 | MYB2_ORYSJ; Transcription factor MYB2 | ||||
TrEMBL | A0A1U8NUQ6 | 1e-180 | A0A1U8NUQ6_GOSHI; transcription factor MYB108-like | ||||
STRING | Gorai.008G137300.1 | 1e-172 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47190.1 | 7e-70 | myb domain protein 2 |
Publications ? help Back to Top | |||
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