PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34762_BGI-A2_v1.0
Common NameF383_14687
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 290aa    MW: 32617.6 Da    PI: 8.114
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34762_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Cotton_A_34762_BGI-A2_v1.0 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61
                                79******************************99************97 PP
2Myb_DNA-binding53.17.1e-1767112148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg++T+eE++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Cotton_A_34762_BGI-A2_v1.0  67 RGNFTEEEEKTIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                                 89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.328961IPR017930Myb domain
SuperFamilySSF466896.11E-3111108IPR009057Homeodomain-like
SMARTSM007172.4E-141363IPR001005SANT/Myb domain
PfamPF002492.7E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-241568IPR009057Homeodomain-like
CDDcd001674.39E-111661No hitNo description
PROSITE profilePS5129425.47462116IPR017930Myb domain
SMARTSM007173.3E-1666114IPR001005SANT/Myb domain
PfamPF002494.9E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2569117IPR009057Homeodomain-like
CDDcd001671.44E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEEEEKTIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKGQ  120
NQDGVSYCQS VPKGQWERRL QTDIRMAKQA LSEALSLRKQ NPSTDSNDFN DLLNSAQPHQ  180
PPTYASSADN ISRLLQNWMK NTPKPASATA AANSAETMTR SSFNSNDEGA LSDKGLDSFF  240
SFNSSSTCSD NDVSLESENS VVFQVESKPN MGDQMPLTLI EKWLLDDVLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00579DAPTransfer from AT5G62470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605064.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-126MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0B0NG300.0A0A0B0NG30_GOSAR; Myb-related protein
STRINGGorai.007G037100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.21e-103myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]