PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_33185_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 235aa    MW: 26551.7 Da    PI: 5.2123
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_33185_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.7e-161461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +grWT+eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
  Cotton_A_33185_BGI-A2_v1.0 14 KGRWTAEEDEILTKYIQVNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                                79******************************99************97 PP
2Myb_DNA-binding53.84.5e-1768111247
                                 SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 g++T+ Ede +v+++  lG++ W++Ia++++ gRt++++k++w+ +
  Cotton_A_33185_BGI-A2_v1.0  68 GNFTAKEDETIVNLHSTLGNR-WSLIASHLP-GRTDNEIKNYWNAH 111
                                 79*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-21564IPR009057Homeodomain-like
PROSITE profilePS5129416.242961IPR017930Myb domain
SuperFamilySSF466891.58E-2911108IPR009057Homeodomain-like
SMARTSM007173.3E-121363IPR001005SANT/Myb domain
PfamPF002493.0E-141461IPR001005SANT/Myb domain
CDDcd001672.81E-91661No hitNo description
PROSITE profilePS5129424.01662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2565116IPR009057Homeodomain-like
SMARTSM007175.0E-1666114IPR001005SANT/Myb domain
PfamPF002494.5E-1568112IPR001005SANT/Myb domain
CDDcd001671.37E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEILTKYIQ VNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRTDLKGGNF TAKEDETIVN LHSTLGNRWS LIASHLPGRT DNEIKNYWNA HLSRKIYRWV  120
MKKNKSCCYN AQKDAISSSN KPMEVVPVIP SHSGSEEERN MENISRPNSS SCNTEKETGS  180
EDIWELCSKD IMGSELLPPD DDFSLTSSGY GENSIGDDLN PITSFFVDDD LDLEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-24121162105MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFlavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636002.11e-174PREDICTED: transcription factor MYB12-like
SwissprotQ9FJ071e-70MY111_ARATH; Transcription factor MYB111
TrEMBLA0A2P5X5A91e-162A0A2P5X5A9_GOSBA; Uncharacterized protein
STRINGGorai.008G141000.11e-157(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.15e-73myb domain protein 111
Publications ? help Back to Top
  1. Pandey A,Misra P,Bhambhani S,Bhatia C,Trivedi PK
    Expression of Arabidopsis MYB transcription factor, AtMYB111, in tobacco requires light to modulate flavonol content.
    Sci Rep, 2014. 4: p. 5018
    [PMID:24846090]
  2. Lotkowska ME, et al.
    The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
    Plant Physiol., 2015. 169(3): p. 1862-80
    [PMID:26378103]
  3. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  4. Zhou Z,Schenke D,Miao Y,Cai D
    Investigation of the crosstalk between the flg22 and the UV-B-induced flavonol pathway in Arabidopsis thaliana seedlings.
    Plant Cell Environ., 2017. 40(3): p. 453-458
    [PMID:28032363]
  5. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  6. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]