PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28895_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 261aa    MW: 29914.8 Da    PI: 6.6806
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28895_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg W +eEd++l+++v+ +G g+W+++++ +g++R +k+c++rw +yl
  Cotton_A_28895_BGI-A2_v1.0 14 RGLWKAEEDLILKNYVETHGEGNWAKVSKLLGLKRGGKSCRLRWKNYL 61
                                788*****************************99************97 PP
2Myb_DNA-binding53.65.3e-1767112148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg++++eE++l+++ +++lG++ W++Ia +++ gRt++++k++w+++l
  Cotton_A_28895_BGI-A2_v1.0  67 RGAMSKEEEDLIIRMHNLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 112
                                 899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.698961IPR017930Myb domain
SuperFamilySSF466891.27E-2812108IPR009057Homeodomain-like
SMARTSM007174.1E-151363IPR001005SANT/Myb domain
PfamPF002492.0E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-221568IPR009057Homeodomain-like
CDDcd001671.99E-111761No hitNo description
PROSITE profilePS5129426.19262116IPR017930Myb domain
SMARTSM007178.6E-1766114IPR001005SANT/Myb domain
PfamPF002491.5E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-2469115IPR009057Homeodomain-like
CDDcd001677.82E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEENKREKKT ESKRGLWKAE EDLILKNYVE THGEGNWAKV SKLLGLKRGG KSCRLRWKNY  60
LRPNIKRGAM SKEEEDLIIR MHNLLGNRWS LIAGRLPGRT DNEVKNYWNT HLNKKSSVLG  120
KRKGKAIDES NHQSIPNQQN NTNTNIAIEN QGGEEPIAPP PAELPMISSP KTTTDDEGSM  180
GLLKVDGLTD NTWMERAVRC FDYDYDNNYE IETPLMMMNK NLNYAHMVFD EEPFTPCLDS  240
FVLFEAFGTD CDLGKTQTFL P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-231111524127MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625697.10.0PREDICTED: transcription factor WER-like
TrEMBLA0A1U8JKY60.0A0A1U8JKY6_GOSHI; transcription factor WER-like
STRINGGorai.004G276500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.13e-65myb domain protein 82