PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11528_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 191aa    MW: 22168.7 Da    PI: 6.1123
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11528_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.86e-14243748
                                HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                eEd++l+++++ +G g W++ ar  g++Rt+k+c++rw++yl
  Cotton_A_11528_BGI-A2_v1.0  2 EEDLILINYIANHGEGVWNSLARAAGLKRTGKSCRLRWLNYL 43
                                9***************************************97 PP
2Myb_DNA-binding54.42.9e-174992146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                rg+ T+eE+ l+ ++++++G++ W++Ia++++ gRt++++k++w++
  Cotton_A_11528_BGI-A2_v1.0 49 RGNITPEEQFLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 92
                                7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.63143IPR017930Myb domain
SuperFamilySSF466893.91E-26290IPR009057Homeodomain-like
CDDcd001672.52E-8243No hitNo description
Gene3DG3DSA:1.10.10.605.1E-19250IPR009057Homeodomain-like
SMARTSM007175.3E-5245IPR001005SANT/Myb domain
PfamPF002493.7E-12243IPR001005SANT/Myb domain
PROSITE profilePS5129424.3364498IPR017930Myb domain
SMARTSM007174.9E-154896IPR001005SANT/Myb domain
PfamPF002494.9E-164992IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-255198IPR009057Homeodomain-like
CDDcd001673.60E-125392No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEEDLILINY IANHGEGVWN SLARAAGLKR TGKSCRLRWL NYLRPDVRRG NITPEEQFLI  60
MELHAKWGNR WSKIAKHLPG RTDNEIKNYW RTRIQKHMNK PAEVCYSNQS DCELLDQQAS  120
SSQLPCNSTN TTNADLMGTS YSPLSSFDYY NNIEAFSGQQ QQQVMLESPS NQEDNYWNME  180
DIWSMQILNG N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-2129913109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB21 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:16972096, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9234740.0JQ923474.1 Gossypium hirsutum MYB24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017647280.11e-142PREDICTED: myb-related protein 340-like
SwissprotQ9SPG99e-78MYB24_ARATH; Transcription factor MYB24
TrEMBLR9QBI01e-139R9QBI0_GOSHI; MYB24
STRINGGorai.001G263200.11e-128(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.14e-80myb domain protein 24
Publications ? help Back to Top
  1. Liu Z, et al.
    A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation.
    Mol Plant, 2015. 8(12): p. 1751-65
    [PMID:26388305]
  2. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  3. Huang H, et al.
    Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development.
    Front Plant Sci, 2017. 8: p. 1525
    [PMID:28928760]