PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_04544_BGI-A2_v1.0 | ||||||||
Common Name | F383_09963 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 249aa MW: 27943.6 Da PI: 9.0033 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ +G g+W++ ++ g+ R++k+c++rw +yl Cotton_A_04544_BGI-A2_v1.0 14 KGAWTKEEDQRLIHYIRVHGEGSWRSLPKAAGLLRCGKSCRLRWMNYL 61 79******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.446 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-22 | 13 | 97 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.11E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-15 | 65 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-4 | 66 | 103 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 10.711 | 66 | 105 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLIHYIR VHGEGSWRSL PKAAGLLRCG KSCRLRWMNY 60 LRPDLKRGNF TEDEDELIIK LHGRLPGRTD NEIKNYWNTH IKRKLVSRGI DPQSHRPLNG 120 TAKATPTELD FRNAPTVPKI KPITTATPSL SFKYDESQVK AKSDSLEGGN CTSSGMTTDE 180 EQPSSRPNEL NLELSIGFST NSANSAESKP KVAKPKAECL CWQLGFQRSE ICSNCENTNG 240 LFRYCTTLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-23 | 13 | 105 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX581833 | 1e-121 | JX581833.1 Gossypium hirsutum clone NBRI_GE14555 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636144.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | P81395 | 1e-84 | MYB30_ANTMA; Myb-related protein 330 | ||||
TrEMBL | A0A0B0PN23 | 0.0 | A0A0B0PN23_GOSAR; Myb-related protein | ||||
STRING | Gorai.009G263200.1 | 1e-180 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 2e-83 | myb domain protein 3 |
Publications ? help Back to Top | |||
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