PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23560.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 563aa    MW: 62903.7 Da    PI: 4.259
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23560.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1003.3e-312410150128
                      NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              k+k++++ewyfFs  d+ky +++r+nrat++gyWk+tgkd++v++ ++++vg+kktLvf++grapkg +t+Wvmheyrl
  mrna23560.1-v1.0-hybrid  24 KLKSRDTEWYFFSLLDRKYGNSSRTNRATEKGYWKTTGKDRPVCH-SSRAVGMKKTLVFHSGRAPKGARTNWVMHEYRL 101
                              5678999**************************************.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.7091125IPR003441NAC domain
SuperFamilySSF1019414.71E-3725125IPR003441NAC domain
PfamPF023651.7E-1427101IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MAFSIAEMQK DYEERETSWV RKSKLKSRDT EWYFFSLLDR KYGNSSRTNR ATEKGYWKTT  60
GKDRPVCHSS RAVGMKKTLV FHSGRAPKGA RTNWVMHEYR LDNQELEKAG IVEKDAYVLC  120
RIFQKSGTGP KNGEQYGAPL LEEEWDEEDE VYGPGEEAIV NEVAVSGGPY TEANDLSDGG  180
YVESIDLDQN INTGVPESAP RPLNFYRGET SNYIEQYGDF VEDAAMTAVG AGETLEYCED  240
QKYIDLPENN EMVAKPVKVE FLTSEYHDNQ KFFNLPEYYE TETKVVKDED YGEPSHNMNP  300
VDVSYSLNDP FLNAAENPTF GDGQFLETND LSIPANPVEP NPEGFDMLDE YLTYFDADDD  360
ISQYIDFDSC CEMLGNENTV SSEPLVEQKQ SVMGEMEPLS TGSQHLVEAH DVNDASSSKQ  420
KPDMQFGSDG KFPFITKASH MLGSIPAPPA FASEFPAKDA ILRLNSEVAS SSSVHAGMIR  480
IRDITSSDNR VEWSIGKDGV VNLVFSVQLP QSDVNSSNLV PMGGSVSGKT GSVVMRGWVL  540
FMFFWVLFIS ISFKMGSYIY AK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-281913160171NO APICAL MERISTEM PROTEIN
1ut4_B2e-281913160171NO APICAL MERISTEM PROTEIN
1ut7_A2e-281913160171NO APICAL MERISTEM PROTEIN
1ut7_B2e-281913160171NO APICAL MERISTEM PROTEIN
3swm_A1e-281913163174NAC domain-containing protein 19
3swm_B1e-281913163174NAC domain-containing protein 19
3swm_C1e-281913163174NAC domain-containing protein 19
3swm_D1e-281913163174NAC domain-containing protein 19
3swp_A1e-281913163174NAC domain-containing protein 19
3swp_B1e-281913163174NAC domain-containing protein 19
3swp_C1e-281913163174NAC domain-containing protein 19
3swp_D1e-281913163174NAC domain-containing protein 19
4dul_A2e-281913160171NAC domain-containing protein 19
4dul_B2e-281913160171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23560.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011469274.10.0PREDICTED: NAC domain-containing protein 78 isoform X1
TrEMBLA0A2P6SCF10.0A0A2P6SCF1_ROSCH; Putative transcription factor NAM family
STRINGXP_004307017.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53473247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-99NAC domain containing protein 53