PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10062.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 460aa    MW: 48018.8 Da    PI: 6.8719
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10062.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.4e-12254299555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  mrna10062.1-v1.0-hybrid 254 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 299
                              99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.34E-13247303No hitNo description
SuperFamilySSF474596.02E-17247308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16251308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9254299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MNSLLNPQQQ QQINTTASSA VQDLQLHHHH HRLHMNNQTT PFDSSHDDFL EQMLSTLGNP  60
SSCSSWADET PPLPPPPHSS NDNSNNVVFS YDDSSNLASK FRSHQISAGA AAASKSSPNA  120
SAAAAAAMML QHQLMMSRGS SDSGYAPMGL ALGSNGEFDR SHNDVDGSSF KSPNQGGGDG  180
GSSVQALFNG FTGSLSPNQP QHFHHPQGGA LQAQNYGAQA QGMTQPPASG SAGATAAQPR  240
PRVRARRGQA TDPHSIAERL RRERIAERMK ALQELVPNAN KTDKASMLDE IIDYVKFLQL  300
QVKVLSMSRL GGAGAVAPLV ADMSSEGGGD CIQTSGNGGT RGRSNQTASS NDSMTVTEHQ  360
VAKLMEEDMG SAMQYLQGKG LCLMPISLAT AISTATCHTR NPLNNNNNSS NNNNPIMASK  420
GGEGPSSPSM SVLTVQSATM ASNGGVDGSG KDAASVSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258263RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10062.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4442222e-66DQ444222.1 Nicotiana plumbaginifolia Joka8 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287121.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG94e-91BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A2P6RI800.0A0A2P6RI80_ROSCH; Putative transcription factor bHLH family
STRINGXP_004287121.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-62LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]