PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03549.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 519aa    MW: 56905.5 Da    PI: 7.2515
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03549.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.2e-31164221260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ +++++ei+Y+g+H+h+k
  mrna03549.1-v1.0-hybrid 164 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-EGHITEIIYKGTHDHPK 221
                              8****************************************.***************85 PP
2WRKY106.41.4e-33340398159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  mrna03549.1-v1.0-hybrid 340 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 398
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-26158222IPR003657WRKY domain
PROSITE profilePS5081122.171158222IPR003657WRKY domain
SuperFamilySSF1182902.62E-24161222IPR003657WRKY domain
SMARTSM007748.2E-33163221IPR003657WRKY domain
PfamPF031069.7E-24164220IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37325400IPR003657WRKY domain
SuperFamilySSF1182901.96E-29332400IPR003657WRKY domain
PROSITE profilePS5081138.825335400IPR003657WRKY domain
SMARTSM007743.1E-39340399IPR003657WRKY domain
PfamPF031063.0E-26341398IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MENAMHSWKM ISSSIAGLAE PSPTTGSFLN PKMVYGTASS TYSGTMVCSN ERNSGSFEFK  60
PHSRLNMVTT DYDHHSNEQA VQVQGQGQGQ HQSQSFVSPP LLKSEMAGSS NQSILSAPVH  120
MVSSGPSAHV EGDADDTSQR GNLNSGVQTS QLDLKGSSPS VSSDDGYNWR KYGQKHVKGS  180
EFPRSYYKCT HPNCEVKKLF ERSHEGHITE IIYKGTHDHP KPQPSRRYNT GAAMMNVQEE  240
RSDKALSLTG RDDKSSSMYG QMSNTNEPSS TPELSPVRGN DGSGEGTGSL ATRILDEVDD  300
EDPFSKRRRM DVGGIDVTPI VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP  360
RSYYKCTNAG CPVRKHVERA SHDPKAVITT YEGKHNHDVP TARTSSHDTS GPTTVNAPSR  420
IRTEENDTIS LDLGVGMSSA SENRSNNHLQ MHSELAERQT HPSSNFKAAP SYYGVLNSGM  480
NQYGSRESPS ESRNIEIPPL NHSSYPYPQN LGRVLTGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37144400577Probable WRKY transcription factor 4
2lex_A5e-37144400577Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03549.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9333880.0KJ933388.1 Rosa hybrid cultivar Radrazz SUSI1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294460.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-179WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2P6QD390.0A0A2P6QD39_ROSCH; Putative transcription factor WRKY family
STRINGXP_004294460.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-179WRKY family protein