PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00006295_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 179aa MW: 19769 Da PI: 4.5082 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 8.2e-19 | 4 | 54 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g FANhyb_icon00006295_a.1.g00001.1 4 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALSIKG 54 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.8E-13 | 4 | 54 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 5 | 63 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.13 | 5 | 62 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-32 | 5 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-36 | 5 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.09E-33 | 6 | 64 | No hit | No description |
PRINTS | PR00367 | 1.3E-10 | 6 | 17 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 28 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
SKHPVYRGVR MRNWGKWVSE IREPRKKSRI WLGTFSTPEM AARAHDVAAL SIKGNSAILN 60 FPELAELLPR PESLHPPDIQ AAAAKAAAMV HLDSTTTTSS SSTSSSSSSS EGLESGEDEL 120 GEIVELPNIE DSFNSGESRS EFILVNDTVD IGWLYDHPPF MGLDHFEEDL VSWDIQMIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 1 | 62 | 10 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00529 | DAP | Transfer from AT5G25810 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011466674.1 | 1e-128 | PREDICTED: ethylene-responsive transcription factor TINY | ||||
Swissprot | Q39127 | 1e-51 | TINY_ARATH; Ethylene-responsive transcription factor TINY | ||||
TrEMBL | A0A3Q8TD75 | 1e-106 | A0A3Q8TD75_FRAAN; Transcription factor ERF24 | ||||
STRING | XP_004302874.1 | 1e-128 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 8e-46 | ERF family protein |
Publications ? help Back to Top | |||
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