PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G11590.1
Common NameDREB3, ERF041, F15N18.180, TINY2
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 236aa    MW: 26043.9 Da    PI: 5.1613
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G11590.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.8e-194999155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  AT5G11590.1 49 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 99
                 68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-134999IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-3250108IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2150108IPR016177DNA-binding domain
SMARTSM003802.3E-3550113IPR001471AP2/ERF domain
PROSITE profilePS5103223.3850107IPR001471AP2/ERF domain
PRINTSPR003672.4E-105162IPR001471AP2/ERF domain
CDDcd000183.06E-3151109No hitNo description
PRINTSPR003672.4E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0020100anatomyhypocotyl
PO:0004507developmental stageplant embryo bilateral stage
PO:0007103developmental stageLP.10 ten leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAEEYYSLRS ERVTQLLVPN SESDSVSDKS KAEQSEKKTK RGRDSGKHPV YRGVRMRNWG  60
KWVSEIREPR KKSRIWLGTF PTPEMAARAH DVAALSIKGT AAILNFPELA DSFPRPVSLS  120
PRDIQTAALK AAHMEPTTSF SSSTSSSSSL SSTSSLESLV LVMDLSRTES EELGEIVELP  180
SLGASYDVDS ANLGNEFVFY DSVDYCLYPP PWGQSSEDNY GHGISPNFGH GLSWDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1942107572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible250379_at0.0
Expression AtlasAT5G11590-
AtGenExpressAT5G11590-
ATTED-IIAT5G11590-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G11590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G11590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1638140.0AL163814.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T22P22 (ESSA project).
GenBankAL1638150.0AL163815.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F15N18 (ESSA project).
GenBankAY5608510.0AY560851.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g11590) mRNA, complete cds.
GenBankAY9401600.0AY940160.1 Arabidopsis thaliana DREB3 (DREB3) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196720.11e-173Integrase-type DNA-binding superfamily protein
SwissprotQ9LYD31e-174DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A178UN411e-171A0A178UN41_ARATH; TINY2
STRINGAT5G11590.11e-172(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Wei G,Pan Y,Lei J,Zhu YX
    Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana.
    J. Biochem. Mol. Biol., 2005. 38(4): p. 440-6
    [PMID:16053711]
  3. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  4. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  5. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  6. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]