PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G25810.1 | ||||||||
Common Name | ERF040, F18A17.60, TINY, tny | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 23941.6 Da PI: 5.1113 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 34 | 84 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f ++e+Aa+a++ a+++++g AT5G25810.1 34 PVYRGVRKRN-WGKWVSEIREPRK---KSRIWLGTFPSPEMAARAHDVAALSIKG 84 68*****887.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.3E-13 | 34 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.657 | 35 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-21 | 35 | 93 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 35 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-34 | 35 | 98 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.61E-31 | 36 | 94 | No hit | No description |
PRINTS | PR00367 | 5.0E-10 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-10 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MIASESTKSW EASAVRQENE EEKKKPVKDS GKHPVYRGVR KRNWGKWVSE IREPRKKSRI 60 WLGTFPSPEM AARAHDVAAL SIKGASAILN FPDLAGSFPR PSSLSPRDIQ VAALKAAHME 120 TSQSFSSSSS LTFSSSQSSS SLESLVSSSA TGSEELGEIV ELPSLGSSYD GLTQLGNEFI 180 FSDSADLWPY PPQWSEGDYQ MIPASLSQDW DLQGLYNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 33 | 92 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.5373 | 0.0 | bud| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30690008 | 0.0 | ||||
Genevisible | 246911_at | 0.0 | ||||
Expression Atlas | AT5G25810 | - | ||||
AtGenExpress | AT5G25810 | - | ||||
ATTED-II | AT5G25810 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis. | |||||
UniProt | Putative transcriptional activator. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00529 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G25810.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q39127 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G25810 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005405 | 0.0 | AC005405.1 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence. | |||
GenBank | AY560855 | 0.0 | AY560855.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g25810) mRNA, complete cds. | |||
GenBank | BT024923 | 0.0 | BT024923.1 Arabidopsis thaliana At5g25810 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | X94698 | 0.0 | X94698.1 A.thaliana TINY mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_197953.1 | 1e-156 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q39127 | 1e-157 | TINY_ARATH; Ethylene-responsive transcription factor TINY | ||||
TrEMBL | A0A178URN2 | 1e-155 | A0A178URN2_ARATH; Tny | ||||
STRING | AT5G25810.1 | 1e-156 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT5G25810.1 |
Entrez Gene | 832650 |
iHOP | AT5G25810 |
wikigenes | AT5G25810 |