PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462875853
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 666aa    MW: 72097.2 Da    PI: 6.3469
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462875853genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.8e-322279260
               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
               +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g+Hnh+k
  462875853 22 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSI-DGQITEVVYKGRHNHPK 79
               8****************************************.***************85 PP
2WRKY101.35.8e-32284341260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g+Hnh+k
  462875853 284 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSI-DGQITEVVYKGRHNHPK 341
                8****************************************.***************85 PP
3WRKY107.37.7e-34457515159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe
  462875853 457 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHTGCPVRKHVERASHDPKSVITTYEGKHNHE 515
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.6061680IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-271780IPR003657WRKY domain
SuperFamilySSF1182901.11E-242080IPR003657WRKY domain
SMARTSM007742.7E-342179IPR003657WRKY domain
PfamPF031062.8E-242278IPR003657WRKY domain
PROSITE profilePS5081123.606278342IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-27279342IPR003657WRKY domain
SuperFamilySSF1182901.11E-24282342IPR003657WRKY domain
SMARTSM007742.7E-34283341IPR003657WRKY domain
PfamPF031062.8E-24284340IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-38442517IPR003657WRKY domain
SuperFamilySSF1182906.67E-30449517IPR003657WRKY domain
PROSITE profilePS5081138.297452517IPR003657WRKY domain
SMARTSM007746.5E-40457516IPR003657WRKY domain
PfamPF031061.5E-26458515IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MNSSENAVHE PQPENVPEKS AEDGYNWRKY GQKHVKGSEN PRSYYKCTHP NCEVKKLLER  60
SIDGQITEVV YKGRHNHPKP QPNRRLAAGA VPSSQGEERY DGVANAEDKS SNGISNLCNS  120
VNSASMIEPV PGPASDDDID AGGGRPYPGD DANEDDDLDS KRRKMESAGI DAALMGKPNR  180
EPRVVVQTGP GINDSKHHDI SMQNHSLSHV SSSGNLLTDT KPLCSRESTH TVNGSSGPNQ  240
SVAMVGPSDN MPAEVGTSEL HQMNSSENAV HEPQPENVPE KSAEDGYNWR KYGQKHVKGS  300
ENPRSYYKCT HPNCEVKKLL ERSIDGQITE VVYKGRHNHP KPQPNRRLAA GAVPSSQGEE  360
RYDGVANAED KSSNGISNLC NSVNSAGMIE PVPGPASDDD IDAGGGRPYP GDDANEDDDL  420
DSKRRKMESA GIDAALMGKP NREPRVVVQT VSEVDILDDG YRWRKYGQKV VKGNPNPRSY  480
YKCTHTGCPV RKHVERASHD PKSVITTYEG KHNHEVPASR NASHEMSAAP MKTAVHPINS  540
NMSGLGGMMR ACEARAFANQ YSQAAESDTI SLDLGVGISP NHSDATNQMQ SSVADPMQYQ  600
MQSMAPVYNS MGLPGMPVQT AHGNAANSSY GSREEKGSEG FTFKAAPLDR SSNLCYSSAG  660
NLVMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-3622518878Probable WRKY transcription factor 4
2lex_A6e-3622518878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462875853
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958143.10.0WRKY transcription factor SUSIBA2
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLK3ZRL50.0K3ZRL5_SETIT; Uncharacterized protein
STRINGSi029245m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-104WRKY family protein