PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008528m
Common NameEUTSA_v10008528mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 260aa    MW: 29520.9 Da    PI: 5.2626
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008528mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.4e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++lv +++++G+ +W++ +++ g+ R++k+c++rw++yl
  Thhalv10008528m 14 KGEWTAEEDQKLVAYINEHGTCDWRSLPQRAGLQRCGKSCRLRWLNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding537.8e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E+e  +++++ lG++ W++Ia+ m  +Rt++++k++w++ 
  Thhalv10008528m  67 RGKFTAQEEEDVIKLHAVLGNR-WAAIAKQME-NRTDNDIKNHWNSC 111
                      89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.719961IPR017930Myb domain
SuperFamilySSF466891.64E-2812108IPR009057Homeodomain-like
SMARTSM007171.7E-131363IPR001005SANT/Myb domain
PfamPF002491.3E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-231568IPR009057Homeodomain-like
CDDcd001672.74E-101661No hitNo description
PROSITE profilePS5129425.11962116IPR017930Myb domain
SMARTSM007171.3E-1466114IPR001005SANT/Myb domain
PfamPF002493.4E-1567111IPR001005SANT/Myb domain
CDDcd001677.45E-969109No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2469116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGKKTWFDDG GMRKGEWTAE EDQKLVAYIN EHGTCDWRSL PQRAGLQRCG KSCRLRWLNY  60
LRPGIKRGKF TAQEEEDVIK LHAVLGNRWA AIAKQMENRT DNDIKNHWNS CLKKRLSRNG  120
IDPMTHEPII NNLTVKTTSE ECGSSSTTTS PSLASPSSSL SSGSARFLNK LAAGISSRQH  180
DLDRIKNILS NPRITSSDQD EEEEGYKRDQ KIGGGEEDDF PMWIDEDVMR YMEIDEMECE  240
TTSYDSVLYE SMHVLDSLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008528m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416574.10.0transcription factor MYB106
SwissprotQ9LE632e-59MY106_ARATH; Transcription factor MYB106
TrEMBLV4KY140.0V4KY14_EUTSA; Uncharacterized protein
STRINGXP_006416574.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.11e-117myb domain protein 47