PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008035m
Common NameEUTSA_v10008035mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 357aa    MW: 39484.8 Da    PI: 7.1676
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008035mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.6e-155094147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +W++ E+e++++a+k+ G   W+ I +++g ++t+ q++s+ qk+
  Thhalv10008035m 50 REKWSEAEHERFLEAIKLCGRA-WRQIEEHIG-TKTAVQIRSHAQKF 94
                     789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.07E-1444100IPR009057Homeodomain-like
PROSITE profilePS5129419.7644599IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-84695IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-154897IPR006447Myb domain, plants
SMARTSM007173.0E-114997IPR001005SANT/Myb domain
PfamPF002494.0E-125093IPR001005SANT/Myb domain
CDDcd001672.78E-85295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAALDRSEQL SSNAENGSCN SNEGTNPETS SNWIENAVKV RKPYTVTKQR EKWSEAEHER  60
FLEAIKLCGR AWRQIEEHIG TKTAVQIRSH AQKFFSKVTR VADNMNDVSD KAVVIPPPRP  120
KRKPAHPYPR KSPVPYPHSP SSNLSAMEKG TNSPTSVLSA FASEDQINSC SSPNSCTSDV  180
QSSIDKKNDN AASNQSLKED AAIGSTPVSS IMLFGKVVLV GESDEPSPYE DYVDDLKSMA  240
DKTGQENHYS WIEKSTSHID PRNVNTDLSL GVCEMSCTGS NVFGSVKEIS ENLERSAEPI  300
NSTWRRLNSL EKQESCYHSN GFRPYKRCLS EREVTSSLSL VTSGEEKSRR RARVCS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008035m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416617.10.0protein REVEILLE 7
SwissprotB3H5A81e-167RVE7_ARATH; Protein REVEILLE 7
TrEMBLV4KB810.0V4KB81_EUTSA; Uncharacterized protein
STRINGXP_006416617.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.11e-163MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]