PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004204m
Common NameEUTSA_v10004204mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 452aa    MW: 50678.6 Da    PI: 5.682
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004204mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.84.1e-14118140426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      e C+f++rtG CkyG++CkF+H+
  Thhalv10004204m 118 EDCSFYMRTGSCKYGSSCKFNHP 140
                      89********************9 PP
2zf-CCCH30.18.3e-10166186525
                      --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      +C++++rtG CkyG++C+F+H
  Thhalv10004204m 166 ECKYYFRTGGCKYGESCRFSH 186
                      6******************** PP
3zf-CCCH37.54e-12209233226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C+f++r+G Ck+G+ CkF+H+
  Thhalv10004204m 209 GEKECPFYMRNGSCKFGGDCKFNHP 233
                      7899********************9 PP
4zf-CCCH18.34.1e-06352377227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++ +tG Ck+  +Ck++H++
  Thhalv10004204m 352 DQPECSYYVKTGDCKFKYKCKYHHPK 377
                      689*********************96 PP
5zf-CCCH32.12e-10400422426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        C +++r+G+Ck+G+ C+F H+
  Thhalv10004204m 400 NMCTHYSRYGICKFGPACRFDHS 422
                      67********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-6113142IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6114141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159114142IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-11118140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-6120139IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5161188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.056161189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6163190IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7166186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-6167189IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6207234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601207235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6209234IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-10209233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.577350378IPR000571Zinc finger, CCCH-type
SMARTSM003560.076350377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-5354380IPR000571Zinc finger, CCCH-type
SMARTSM003560.0078396423IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971396424IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6397424IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4401422IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-7402422IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MSKPEEIPDP NPATTDPNPP SRSSSDNDPV ADRDPSDLNH VSEELSDHLR NVGLEEATKD  60
LSVPISASEG NRETDSWALG SEKKNKEEEE EEEEEAEARD GSEREKRMIA YPVRPDAEDC  120
SFYMRTGSCK YGSSCKFNHP VRRKFPIGRE KVREREEDVE NPRLMECKYY FRTGGCKYGE  180
SCRFSHTKEQ TSLTSRPELN FLGLPIRPGE KECPFYMRNG SCKFGGDCKF NHPDPTAIGG  240
VDSPLFRGNN GGSVGSFSPK DASQASSTSW SSSKHMNGTG TAPFIPVMYS QNRGVSPQNS  300
EWNGYQAHSV YSSERSGLPP STYQVNNSLA ETSSFSQYQQ QMPVEEFPER PDQPECSYYV  360
KTGDCKFKYK CKYHHPKNRL PKQAPSSFND KGLPLRPDQN MCTHYSRYGI CKFGPACRFD  420
HSIPPTFSSS ISQTVEAPQV GDNRNDNDSW N*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004204m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287900.0AK228790.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-10-O16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394295.10.0zinc finger CCCH domain-containing protein 67 isoform X1
SwissprotQ5RJC50.0C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLV4MJP00.0V4MJP0_EUTSA; Uncharacterized protein
STRINGXP_006394295.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.10.0C3H family protein