PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10001498m | ||||||||
Common Name | EUTSA_v10001498mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MYB | ||||||||
Protein Properties | Length: 376aa MW: 41759.3 Da PI: 5.1908 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd++l +++ G g+W++ ++ g++R++k+c++rw +yl Thhalv10001498m 14 RGRWTAEEDQILSSYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYL 61 8*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56 | 9.4e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+e+ v+++ +G++ W++Ia++++ gRt++++k++w+++l Thhalv10001498m 67 RGNITPEEEEIVVKLHSTFGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.01 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.05E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.19E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.512 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.09E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MGRAPCCEKV GIKRGRWTAE EDQILSSYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY 60 LRSDLKRGNI TPEEEEIVVK LHSTFGNRWS LIASHLPGRT DNEIKNYWNS HLSRKLHNFI 120 RKPSSISHDV AVVIMSAPPA SPPAKRRPGR TSRSAMKPKT HYPKTRKSKK TSAPPTETNA 180 DVAVKAVAGE EALMMELSGA EIDDYYGACH ERGECCNNNN NDKNNLMISI DGDNGVLSFD 240 EDIADLLLDE SDPGHVFTSF GGDHAKSNHL GDSDGARGFS ENLDCLQSCP SVESFLNCEH 300 QVNDALTDEF IDWDCVWQQG HHNKNLWDEN EGSDSMVSWL LDGDDEATIG KSNCENFGEP 360 LDHDEENALV AWLLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-23 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 5e-23 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-23 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis mainly in the root (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:15923334, ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10001498m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen deficiency, sucrose and UV LIGHT (PubMed:17053893, PubMed:9839469). Triggered by HY5 in response to light and UV-B (PubMed:19895401). {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966744 | 1e-159 | KC966744.1 Brassica napus MYB transcription factor 12 (MYB12.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006397940.1 | 0.0 | transcription factor MYB12 | ||||
Swissprot | O22264 | 0.0 | MYB12_ARATH; Transcription factor MYB12 | ||||
TrEMBL | V4LHW8 | 0.0 | V4LHW8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006397940.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 1e-179 | myb domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10001498m |
Entrez Gene | 18015639 |