PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916518.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 647aa    MW: 68767.8 Da    PI: 5.2739
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916518.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.25.1e-1402556361374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++l++a+al++++s la+++g +m+++a +f+eALa+r++r        ++p+++ + +s+ + + +  f+e +P+lkf+h
  XP_010916518.1 255 LVHTLMACAEAVQEENLKAADALVKQISVLATSQGGAMRKVAGFFAEALARRIYR--------VHPQQDCSLDSAFSDMLQMHFYESCPYLKFAH 341
                     689****************************************************........77777776667777777777************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpps+R+Tg+g+p+++++++l+++g++La+fAe+++v+f+++  va++l+dle
  XP_010916518.1 342 FTANQAILEAFAGCRRVHVIDFGMKQGMQWPALMQALALRPGGPPSFRLTGIGPPQPDNTDALQQVGWKLAQFAETIHVDFQYRGYVANSLADLE 436
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp...........gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                     + +L  +             Ea+aVn+vl+lhrll+++++le+    vL +v+ ++P++v+vveqea+hn++sFlerf+eal+yys++fdsle +
  XP_010916518.1 437 PGMLGAEAtgggnnggdeePEAVAVNSVLELHRLLARPGALEK----VLGTVRAVRPRIVTVVEQEANHNAGSFLERFTEALHYYSTMFDSLEGG 527
                     ****8887788888888889***********************....*********************************************998 PP

            GRAS 275 .......lpres....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                            +   +    ++++++++++lgr+i+nvvacegaer+erhetl++Wr r+++aGF+pv+l+++a kqa++ll+ ++ +dgyrvee++g+
  XP_010916518.1 528 ctaaaaeV---AagggQQDRVMSEVYLGRQICNVVACEGAERTERHETLGQWRGRMTRAGFEPVHLGSNAFKQASMLLALFAgGDGYRVEEKDGC 619
                     55554442...1555799***************************************************************************** PP

            GRAS 358 lvlgWkdrpLvsvSaWr 374
                     l+lgW++rpL+++SaWr
  XP_010916518.1 620 LTLGWHTRPLIATSAWR 636
                     ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.9E-3539109IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011294.1E-3339115No hitNo description
PROSITE profilePS5098567.125229615IPR005202Transcription factor GRAS
PfamPF035141.8E-137255636IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MKREHQESGG GVGGYPAAEM LSSGKGKMTA MEEQDGGVDE LLAALGYKVR SSDMADVALK  60
LEQLEMAMGS SAAQDDAFLS HLASDTVHYN PSDLSTWLES MLSELNTPPP PLPSASIPNH  120
QSNHLDLPPV PAAVAPASIL DPAECSTVTT VDLPTPRRQS EYDLKPIPSA VTAAPGRIVY  180
GPEPPVELNA RDRKRMRTSS SSSSSSRAGG IGVVGVGGMG SSMPSATEVS SMVAGPAAGA  240
LPVVVVDSQE AGIRLVHTLM ACAEAVQEEN LKAADALVKQ ISVLATSQGG AMRKVAGFFA  300
EALARRIYRV HPQQDCSLDS AFSDMLQMHF YESCPYLKFA HFTANQAILE AFAGCRRVHV  360
IDFGMKQGMQ WPALMQALAL RPGGPPSFRL TGIGPPQPDN TDALQQVGWK LAQFAETIHV  420
DFQYRGYVAN SLADLEPGML GAEATGGGNN GGDEEPEAVA VNSVLELHRL LARPGALEKV  480
LGTVRAVRPR IVTVVEQEAN HNAGSFLERF TEALHYYSTM FDSLEGGCTA AAAEVAAGGG  540
QQDRVMSEVY LGRQICNVVA CEGAERTERH ETLGQWRGRM TRAGFEPVHL GSNAFKQASM  600
LLALFAGGDG YRVEEKDGCL TLGWHTRPLI ATSAWRVATG DALSVAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6326263526378Protein SCARECROW
5b3h_A1e-6326263525377Protein SCARECROW
5b3h_D1e-6326263525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916518.10.0DELLA protein SLR1
SwissprotQ9ST480.0DWRF8_MAIZE; DELLA protein DWARF8
TrEMBLA0A2H3Z8L00.0A0A2H3Z8L0_PHODC; DELLA protein SLR1
STRINGXP_008809806.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]