PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00012.1.p
Common NameEUGRSUZ_I00012, LOC104417982
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 329aa    MW: 35804.9 Da    PI: 7.199
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEde+l+ ++k++G g+W++ ++  g+ R++k+c++rw +yl
  Eucgr.I00012.1.p 14 KGAWSKEEDERLIAYIKRHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                      79******************************99************97 PP
2Myb_DNA-binding55.91e-1767111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+++ eEdel++ ++ +lG++ W++Ia++++ gRt++++k++w+++
  Eucgr.I00012.1.p  67 RGNFSDEEDELIITLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.863961IPR017930Myb domain
SuperFamilySSF466893.95E-2912108IPR009057Homeodomain-like
SMARTSM007177.9E-141363IPR001005SANT/Myb domain
PfamPF002491.8E-151461IPR001005SANT/Myb domain
CDDcd001671.48E-111661No hitNo description
PROSITE profilePS5129428.34162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-2865116IPR009057Homeodomain-like
SMARTSM007171.8E-1766114IPR001005SANT/Myb domain
PfamPF002493.9E-1667111IPR001005SANT/Myb domain
CDDcd001674.84E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRSPCCESE HMNKGAWSKE EDERLIAYIK RHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF SDEEDELIIT LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLHARG  120
IDPQTHRPLD YTSTAGAAAA ATHTICSNAN NSGNKATPHS TTCEELSSST PPPLRAAKKR  180
LNSLASAVVT VREEEESTNN SMSSDVTTTT TTAEEVQVQL INNKNGINMD EDGDANADLD  240
LSLCLSVHSP KTIIRNNSTS STASTELLRS PPPLPAHGHH EVFLSLGFHP DARHACSGTS  300
CSAPTATTLD LLSDPSSHPI SGASSYWF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28121165108B-MYB
1h8a_C5e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00012.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027479.10.0PREDICTED: myb-related protein 308
SwissprotQ9SZP16e-83MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A059AJ460.0A0A059AJ46_EUCGR; Uncharacterized protein
STRINGXP_010027479.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.13e-84myb domain protein 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]