PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C02592.1.p
Common NameEUGRSUZ_C02592, LOC104437555
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 459aa    MW: 45954.7 Da    PI: 6.7751
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C02592.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.4e-12255300555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Eucgr.C02592.1.p 255 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 300
                       99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.32E-13248304No hitNo description
SuperFamilySSF474595.63E-17248310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16252309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9255300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MQPCSREMQT LSSLLNPQQV SLHDLQGSNG SHPHHGQIQA GGGGAGAGHH HFDPSSSSGD  60
DFLDHMFSGI PSWADHLGTG GDPAAAHHLP MGQNGDVTVD LSEDVGFHGL DEATVLAAKL  120
RQHQIGGGGG GGGGGGAQAA AAAAKAMMLQ QMLMAGGDGS PSSSHFKSAN LGGDSSVQAL  180
FNGFAGSLHG NGQTSNHSQH FSLPQGGSMQ ASPNFSAQAA AAAASGSGGT AGTAAAPGQP  240
RQRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA NKTDKASMLD EIIDYVKFLQ  300
LQVKVLSMSR LGGAAAVAPL VADMSSEGGG GGDGSQANGS GRSSSNGGAS GDSLTVSEHQ  360
VAKLMEEDMG SAMQYLQGKG LCLMPISLAT AISTATCQSR IPLPSPSAHH HHHHHQGPGD  420
GPTSPSVSAL TVQSAALAGG AAAGGGVDAK DAASISKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259264RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C02592.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057842e-32AP005784.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0014G10.
GenBankAP0149652e-32AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126172e-32CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048828.10.0PREDICTED: transcription factor bHLH66
SwissprotQ9ZUG92e-92BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A059CSL70.0A0A059CSL7_EUCGR; Uncharacterized protein
STRINGXP_010048828.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-61LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]