PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C01374.1.p | ||||||||
Common Name | EUGRSUZ_C01374, LOC104436817 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 220aa MW: 24945.6 Da PI: 9.9389 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 9.1e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEd +l+++v+ +G g+W+ ++++ g++R +k+c++rw +yl Eucgr.C01374.1.p 8 KGLWKPEEDMILKQYVETHGEGNWAVVSQRSGLKRGGKSCRLRWKNYL 55 678*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.7e-17 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l Eucgr.C01374.1.p 61 RGGMSPEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 106 6789******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.538 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.4E-29 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-14 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-22 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.05E-10 | 11 | 55 | No hit | No description |
PROSITE profile | PS51294 | 25.199 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-16 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 61 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-24 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.96E-12 | 64 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MKARKIKKGL WKPEEDMILK QYVETHGEGN WAVVSQRSGL KRGGKSCRLR WKNYLRPNIK 60 RGGMSPEEED LIIRMHKLLG NRWSLIAGRL PGRTDNEVKN YWNTHLNKRH LSRKRNSIAS 120 NGRRKDENIC ATLATETAPE VPAPPPMTPP PVIHNGSNDL DAKEAMMTGR KEDRLEDGER 180 FVYGCDMGSP LSMPTSNYSA SVVFDDELLV PWLDSFVFV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-24 | 8 | 109 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C01374.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047969.1 | 1e-163 | PREDICTED: transcription factor MYB82 | ||||
Swissprot | Q9LTF7 | 8e-70 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | A0A059CNL3 | 1e-161 | A0A059CNL3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010047969.1 | 1e-162 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 9e-70 | myb domain protein 82 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C01374.1.p |
Entrez Gene | 104436817 |