PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02074.1.p
Common NameEUGRSUZ_A02074, LOC104442639
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 411aa    MW: 45589.6 Da    PI: 5.2943
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM186.94.4e-58201471129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdee++++yL++kv ++++++ ++++evd++k+ePwdLp+k+k +ekewyfF+++d+ky+tg+r+nrat+sgyWkatgkdke++
  Eucgr.A02074.1.p  20 LPPGFRFHPTDEEIITHYLTPKVLNSSFSA-SAVSEVDLNKCEPWDLPTKAKMGEKEWYFFCQKDRKYPTGTRTNRATESGYWKATGKDKEIY 111
                       79**************************99.88***************99999**************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       + +g+lvg+kktLvfy grapkgekt+Wvmheyrle
  Eucgr.A02074.1.p 112 RGRGRLVGMKKTLVFYMGRAPKGEKTNWVMHEYRLE 147
                       **********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-6512171IPR003441NAC domain
PROSITE profilePS5100559.94520171IPR003441NAC domain
PfamPF023655.3E-3021146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0005634Cellular Componentnucleus
GO:0000975Molecular Functionregulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MEEEGMVVNQ GREHQELMDL PPGFRFHPTD EEIITHYLTP KVLNSSFSAS AVSEVDLNKC  60
EPWDLPTKAK MGEKEWYFFC QKDRKYPTGT RTNRATESGY WKATGKDKEI YRGRGRLVGM  120
KKTLVFYMGR APKGEKTNWV MHEYRLEGKL AYYNLSRAAK DEWVVSRVFH KSTGVKKDPS  180
PGLLTRINSY VDDFLDMSSP PPPLIDAPSS SRPSSSFTDG ENELKGVINS GPRALDGNGS  240
YFYFPADSTD NQNQVLLQEQ GDRMNYCHVM NPSIDASHCP PQLSNHPPLF PSHGSTNPEE  300
YLHQGPSDVG SSFGGTGFSC GSTDPALLRA IRANFGASNP QNNNQCKVEQ FSSNHSMVSL  360
SQDTGLSTDV NNEISSVPIS KQEVGSCDAF EDLEGLSSVG PIQDFGFWDY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-531817715171NO APICAL MERISTEM PROTEIN
1ut4_B2e-531817715171NO APICAL MERISTEM PROTEIN
1ut7_A2e-531817715171NO APICAL MERISTEM PROTEIN
1ut7_B2e-531817715171NO APICAL MERISTEM PROTEIN
3swm_A3e-531817718174NAC domain-containing protein 19
3swm_B3e-531817718174NAC domain-containing protein 19
3swm_C3e-531817718174NAC domain-containing protein 19
3swm_D3e-531817718174NAC domain-containing protein 19
3swp_A3e-531817718174NAC domain-containing protein 19
3swp_B3e-531817718174NAC domain-containing protein 19
3swp_C3e-531817718174NAC domain-containing protein 19
3swp_D3e-531817718174NAC domain-containing protein 19
4dul_A2e-531817715171NAC domain-containing protein 19
4dul_B2e-531817715171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00332DAPTransfer from AT3G04060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02074.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054347.10.0PREDICTED: NAC domain-containing protein 92
TrEMBLA0A059DHW70.0A0A059DHW7_EUCGR; Uncharacterized protein
STRINGXP_010054347.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-102Arabidopsis NAC domain containing protein 87