PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054602.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 536aa    MW: 59059.2 Da    PI: 6.1261
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054602.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.89.9e-1111625352374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svs....elykalppsetseknsseelaalklfsevsPilkf 93 
                    +lL++cAeav+ +d+ +a++lL++l+ +a   g+++qR+a++f+++La rl+  +       ++ a+ + ++     +e+  al+l ++++P+++f
  EcC054602.40 162 LQLLVACAEAVACRDKLQASSLLSELRSRALVFGTSFQRVASCFVQGLADRLSLlQPLgtlgFISPAVVAAASGAAAPDEKEEALRLAYKICPYIQF 258
                   699************************************************98733221111344444455555555999999************** PP

          GRAS  94 shltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                   +h++aN  Ilea+ege+ vH++D+++s Gl    QW  L+q+La R ++pp +lRiT++g     s+e+  ++g+ L+ +A ++g+++ef+v v+++
  EcC054602.40 259 GHFVANTSILEAFEGENFVHVVDLGMSLGLpgghQWRRLIQSLAGRHGQPPrRLRITAIGL----SAEKFCSIGDELSAYALNFGINLEFSV-VETN 350
                   *************************998644444*************777779********....9*************************9.799* PP

          GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                   le l+ e++++ +gE+laVn++lqlh +++es    +   +vL+++ +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fdsl++ lp+ +  r
  EcC054602.40 351 LEHLQAEDIKICEGEVLAVNSILQLHCVVKESRGALN---SVLQMIHNLSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDVMLPKYDTRR 444
                   *****************************88877777...8******************************************************** PP

          GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +kvE++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+ +p++  +++qak  l k k  +gy+v ee+g+lvlgW+++p+v++S+W+
  EcC054602.40 445 AKVEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQLAPIK--MMAQAKQWLGKNKvCEGYTVVEEKGCLVLGWNSKPIVAASCWK 535
                   **********************************************96..789**********9****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.683135516IPR005202Transcription factor GRAS
PfamPF035143.4E-108162535IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006165Biological Processnucleoside diphosphate phosphorylation
GO:0006183Biological ProcessGTP biosynthetic process
GO:0006228Biological ProcessUTP biosynthetic process
GO:0006241Biological ProcessCTP biosynthetic process
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0004550Molecular Functionnucleoside diphosphate kinase activity
GO:0005515Molecular Functionprotein binding
GO:0016747Molecular Functiontransferase activity, transferring acyl groups other than amino-acyl groups
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MAPGPYQVPN ELFQNINDDL SHLTIDSVSC LKLASSSSSS SSSLTHYLSP SSIDHEDMLV  60
YCDPEEEEEA RGQKRLKRTY SFAESIGSNS PRAYTGGFGS GGISRSSSMS SLDTFPRLHF  120
RDHIWTYSQR YVAVEAVEEA AAAVSVVGGE EEEGTADGMR LLQLLVACAE AVACRDKLQA  180
SSLLSELRSR ALVFGTSFQR VASCFVQGLA DRLSLLQPLG TLGFISPAVV AAASGAAAPD  240
EKEEALRLAY KICPYIQFGH FVANTSILEA FEGENFVHVV DLGMSLGLPG GHQWRRLIQS  300
LAGRHGQPPR RLRITAIGLS AEKFCSIGDE LSAYALNFGI NLEFSVVETN LEHLQAEDIK  360
ICEGEVLAVN SILQLHCVVK ESRGALNSVL QMIHNLSPKV LVLVEQDSSH NGPFFLGRFM  420
EALHYYSAIF DSLDVMLPKY DTRRAKVEQF YFAEEIKNIV SCEGPARVER HERVDQWRRR  480
MSRAGFQLAP IKMMAQAKQW LGKNKVCEGY TVVEEKGCLV LGWNSKPIVA ASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5715053412378Protein SCARECROW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039137.10.0PREDICTED: scarecrow-like protein 21
TrEMBLA0A059A5Q60.0A0A059A5Q6_EUCGR; Uncharacterized protein
STRINGXP_010039137.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.16e-71RGA-like 1