PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC019207.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 299aa    MW: 33766 Da    PI: 6.4513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC019207.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ed++l ++++++G  +W++++   g+ R +k+c++rw +yl
     EcC019207.10 15 KGLWSPDEDQRLRNYIHKHGYSCWSSVPINAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding58.81.2e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E+e +++++++lG++ W+ Ia++++ gRt++++k++w++yl
     EcC019207.10  68 RGAFTVQEEETILNLHHLLGNK-WSQIAKHLP-GRTDNEIKNHWHSYL 113
                      89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2751062IPR017930Myb domain
SuperFamilySSF466892.27E-2912109IPR009057Homeodomain-like
SMARTSM007171.2E-91464IPR001005SANT/Myb domain
PfamPF002491.1E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-211669IPR009057Homeodomain-like
CDDcd001671.36E-91862No hitNo description
PROSITE profilePS5129428.26463117IPR017930Myb domain
SMARTSM007171.1E-1667115IPR001005SANT/Myb domain
PfamPF002493.2E-1768113IPR001005SANT/Myb domain
CDDcd001672.60E-1270113No hitNo description
Gene3DG3DSA:1.10.10.607.7E-2670117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006378Biological ProcessmRNA polyadenylation
GO:0009767Biological Processphotosynthetic electron transport chain
GO:0005849Cellular ComponentmRNA cleavage factor complex
GO:0009539Cellular Componentphotosystem II reaction center
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003729Molecular FunctionmRNA binding
GO:0020037Molecular Functionheme binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGCKSVEKPK ARHRKGLWSP DEDQRLRNYI HKHGYSCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLRRGA FTVQEEETIL NLHHLLGNKW SQIAKHLPGR TDNEIKNHWH SYLKKKINIK  120
ADESHLQMPS NSDSVGSPNS TDFPSDHTQS SDTTEYTKSS ASQIPKIFNP TKEGESSLPT  180
LLFEEWLSLD NSPGGSFTNH AESQASGDDH HYHSSSQNSL VSSLLNEGTF GGSHQYQNDQ  240
IEFSTSEIYS SQFNFEDQIS GNGLVQCLSG DDLCSAFSID NMLYSENLFT YQGRNYEGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24151187109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061134.10.0PREDICTED: transcription factor LAF1
SwissprotQ9M0K44e-56LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A059DJX61e-154A0A059DJX6_EUCGR; Uncharacterized protein
STRINGXP_010061134.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-61myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]