PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0320s00013.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family GATA
Protein Properties Length: 1081aa    MW: 111777 Da    PI: 6.9406
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0320s00013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.99.1e-16271299129
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGly 29 
                           C +Cgt++Tp+WR+gp g+ktLCnaCG++
  Dusal.0320s00013.1.p 271 CMQCGTSQTPQWREGPHGPKTLCNACGVR 299
                           99*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004390.003236161IPR001025Bromo adjacent homology (BAH) domain
PROSITE profilePS5103812.85336161IPR001025Bromo adjacent homology (BAH) domain
PfamPF014261.1E-837160IPR001025Bromo adjacent homology (BAH) domain
PROSITE profilePS5011412.044265298IPR000679Zinc finger, GATA-type
SMARTSM004013.5E-11265316IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.37E-11268311No hitNo description
Gene3DG3DSA:3.30.50.101.2E-12268300IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.18E-12271320No hitNo description
PfamPF003201.4E-13271299IPR000679Zinc finger, GATA-type
PROSITE patternPS003440271296IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0048527Biological Processlateral root development
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1081 aa     Download sequence    Send to blast
MQMQVFVWGH PVVSKAEDAG HYPFRQHYQN FWLQGQEYRI GDAVLLESSP EAGSAPYIAQ  60
LLACFRQHSP GGAEEEHFIQ VKWFERATAL NISQHSKEVV ELEETDCNPL GCIGGRCTII  120
RANNWAEASH VAATAVSDPG LEVFFCQGLY NPVTNVLHKY PQLEGGACIG HSKRTMHPTR  180
LPSDEVDSTV VHISSDGYLP GSGSNKRQRL ASPYEPDFLD ASMLDQLLVE EDLRDQQVQH  240
VGHAANIGMC SFEGNLASPP AHGVCVPGRC CMQCGTSQTP QWREGPHGPK TLCNACGVRR  300
VRAQQRSSKS MPSAAARAPK TSHAACMSSA GPQQQQQQQQ QKQPPTSSDK VPATKAPAKA  360
EPKAEAPAST SSRPTRQSAV LAASRNAQFA RTGVFPEIEE RCSSAQVRAA QQQQQQQQQQ  420
SNICRKRRSA SASAAAQQQQ QQQPHQHKAG TVGYQGSGGS SGQGAAARPE AAADSSMWPQ  480
HSCENNSSHL STGSALAALG DGMGTLLSEE GEEAPRDEGR NSSEEPEGGG SLHGGHLHTS  540
TTSATAEASA PQDKPHLRQS SRQQGLAAMA VAARSSHNDL ASFQQQQQQQ QLRGNGVNAA  600
EGSSKASGAS EKQQQQQQGH ADGGGNGVGG SKGRAPAGTA AVAAEPRVPK AGPAPGGASK  660
AATSRAAVGA AAQVGLSSSV AHVPYRVPQV AVFELHERVG SVNGPPAKLE PVVVEGAEAS  720
VAVVGGVTRG KAGGGGSAIS TEGVAKVSHK KGASHKKGAG SAHGGGSKSK AKSKGAKSAA  780
PPAQHENNAT LASQPSATPA LPPAPHTPSP LPGSPPPASP PPPHISPAMA ALPQLPPPSS  840
LSGAKDAAAL MSSGECGVGM GPGFGGEAGE VQDEAMALQL REARSCAEHA AAQVDTADAA  900
VAQAQRVLLE CQEAAERARG DAIAANLRLS ELRHLSGDHQ GGHMAATSLP PPPPHPVGFM  960
PFGPSSFSLL PPLPQQLELL PPAPLLPPPP PPPPPPPPPA SPPHLHPPPP PHLELHAAHQ  1020
PHALLQGPPP PSAGLMPLSG VGLGDDDMGP MCMLPCDGHD VMGHMGDDMG EEMADMMALF  1080
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Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2201430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.15e-12GATA transcription factor 23