PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G26930.1 | ||||||||
Common Name | F2P16.190, F2P16.9, GATA23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GATA | ||||||||
Protein Properties | Length: 120aa MW: 13238.7 Da PI: 10.74 | ||||||||
Description | GATA transcription factor 23 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58 | 1.3e-18 | 28 | 62 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs C+ttkTp+WR gp g+k+LCnaCG+++rk+++ AT5G26930.1 28 CSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRR 62 ********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.33E-13 | 19 | 62 | No hit | No description |
PROSITE profile | PS50114 | 12.189 | 22 | 58 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.4E-17 | 22 | 78 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.6E-16 | 26 | 62 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.0E-16 | 28 | 62 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 6.32E-10 | 28 | 62 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 28 | 53 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000036 | anatomy | leaf vascular system | ||||
PO:0000052 | anatomy | petiole vascular system | ||||
PO:0005028 | anatomy | inflorescence vascular system | ||||
PO:0005352 | anatomy | xylem | ||||
PO:0006036 | anatomy | root epidermis | ||||
PO:0006203 | anatomy | pericycle | ||||
PO:0008003 | anatomy | fruit vascular system | ||||
PO:0009005 | anatomy | root | ||||
PO:0020139 | anatomy | leaf midvein |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MDPRKLLSCS SSYVSVRMKE EKGTIRCCSE CKTTKTPMWR GGPTGPKSLC NACGIRHRKQ 60 RRSELLGIHI IRSHKSLASK KINLLSSSHG GVAVKKRRSL KEEEQAALCL LLLSCSSVLA |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 246798_at | 0.0 | ||||
Expression Atlas | AT5G26930 | - | ||||
AtGenExpress | AT5G26930 | - | ||||
ATTED-II | AT5G26930 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a member of the GATA factor family of zinc finger transcription factors. | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G26930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G26930 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT024789 | 0.0 | BT024789.1 Arabidopsis thaliana At5g26930 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_198045.1 | 2e-80 | GATA transcription factor 23 | ||||
Swissprot | Q8LC59 | 1e-81 | GAT23_ARATH; GATA transcription factor 23 | ||||
TrEMBL | C0SVQ8 | 4e-79 | C0SVQ8_ARATH; Uncharacterized protein At5g26930 (Fragment) | ||||
STRING | AT5G26930.1 | 6e-80 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14484 | 16 | 22 | Representative plant | OGRP68 | 17 | 287 |
Link Out ? help Back to Top | |
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Phytozome | AT5G26930.1 |
Entrez Gene | 832751 |
iHOP | AT5G26930 |
wikigenes | AT5G26930 |