PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do025322.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 347aa MW: 37660.5 Da PI: 8.8097 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.8 | 1e-53 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeel+ +yL++++++ +++ ++i++vdiyk++PwdLp++++ ++kewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++s+ +ge Do025322.1 9 LPPGFRFHPTDEELILHYLRNRAANAVCPV-DIIADVDIYKFDPWDLPSRAAYGDKEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHSSaTGE 106 79****************************.99***************888889***************************************998899 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy+gr pkg+kt+W+mheyrl Do025322.1 107 SVGVKKALVFYRGRPPKGTKTNWIMHEYRL 136 9***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.8E-65 | 3 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.231 | 9 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-28 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0009835 | Biological Process | fruit ripening | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MIMANPAMLP PGFRFHPTDE ELILHYLRNR AANAVCPVDI IADVDIYKFD PWDLPSRAAY 60 GDKEWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH SSATGESVGV KKALVFYRGR 120 PPKGTKTNWI MHEYRLAADA QAGNTYRPMK FRNASMRLDD WVLCRIYKKT SQASPMAVPP 180 LSDHEQDEPC GFDDNPYAAS SSAAMLVQGA YPVVQQAAAV APQRMHRIPS LSELFSDPSL 240 AHFFEDGGVA ADMARLDQQQ QQHGGTLLGH PITSQLLLSN GGIMPGQMDS SASTSAGAGD 300 GAAGKRKRSE TSTGAGAKKP NGSCFGATFQ IGNGLQGSLS HHMLAPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-74 | 9 | 173 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-74 | 9 | 173 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-74 | 9 | 173 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-74 | 9 | 173 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-74 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 8e-74 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 8e-74 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 8e-74 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 8e-74 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 8e-74 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 8e-74 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 8e-74 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
4dul_A | 6e-74 | 9 | 173 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 6e-74 | 9 | 173 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do025322.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728029 | 0.0 | KJ728029.1 Zea mays clone pUT6168 NAC transcription factor (NAC44) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798103.1 | 0.0 | NAC domain-containing protein 10-like | ||||
TrEMBL | A0A1E5UNF8 | 0.0 | A0A1E5UNF8_9POAL; NAC transcription factor NAM-B1 | ||||
STRING | Si036303m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 6e-83 | NAC-like, activated by AP3/PI |