PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G04070.1 | ||||||||
Common Name | anac047, NAC047 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 359aa MW: 40849.6 Da PI: 7.0264 | ||||||||
Description | NAC domain containing protein 47 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.3 | 1.3e-52 | 10 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrFhPtdeel+ +yL+kkv++++++l ++i++vdiyk++PwdLp+k+ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + + AT3G04070.1 10 LPPGFRFHPTDEELILHYLRKKVSSSPVPL-SIIADVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLIAVPnge 106 79****************************.89***************988899***************************************99554 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e++g+kk Lvfy+g+ pkg+kt+W+mheyrl AT3G04070.1 107 gFHENIGIKKALVFYRGKPPKGVKTNWIMHEYRL 140 44455***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-62 | 7 | 186 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.981 | 10 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-28 | 11 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MISKDPRSSL PPGFRFHPTD EELILHYLRK KVSSSPVPLS IIADVDIYKS DPWDLPAKAP 60 FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI AVPNGEGFHE NIGIKKALVF 120 YRGKPPKGVK TNWIMHEYRL ADSLSPKRIN SSRSGGSEVN NNFGDRNSKE YSMRLDDWVL 180 CRIYKKSHAS LSSPDVALVT SNQEHEENDN EPFVDRGTFL PNLQNDQPLK RQKSSCSFSN 240 LLDATDLTFL ANFLNETPEN RSESDFSFMI GNFSNPDIYG NHYLDQKLPQ LSSPTSETSG 300 IGSKRERVDF AEETINASKK MMNTYSYNNS IDQMDHSMMQ QPSFLNQELM MSSHLQYQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-69 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-69 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-69 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-69 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-69 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-69 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-69 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-69 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-69 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-69 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-69 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-69 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
4dul_A | 2e-69 | 9 | 190 | 16 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-69 | 9 | 190 | 16 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.42943 | 0.0 | inflorescence| leaf| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 258809_at | 0.0 | ||||
Expression Atlas | AT3G04070 | - | ||||
AtGenExpress | AT3G04070 | - | ||||
ATTED-II | AT3G04070 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00333 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G04070.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G04070 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227417 | 0.0 | AK227417.1 Arabidopsis thaliana mRNA for NAM-like protein, complete cds, clone: RAFL14-07-D22. | |||
GenBank | BT005985 | 0.0 | BT005985.1 Arabidopsis thaliana At3g04070 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_187057.2 | 0.0 | NAC domain containing protein 47 | ||||
Swissprot | Q84TD6 | 0.0 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | A0A178VJ79 | 0.0 | A0A178VJ79_ARATH; NAC047 | ||||
STRING | AT3G04070.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7723 | 25 | 40 | Representative plant | OGRP17 | 15 | 800 |
Link Out ? help Back to Top | |
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Phytozome | AT3G04070.1 |
Entrez Gene | 819562 |
iHOP | AT3G04070 |
wikigenes | AT3G04070 |