PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do001523.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

TCP

Protein Properties

Length: 362aa MW: 37026.3 Da PI: 5.5852

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do001523.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.5	3.9e-37	69	171	6	95
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg........ 88 r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++ ++ss+ Do001523.1 69 ARNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIATtvdgvlriP---------TQSSSsssspsal 158 6999********************************************************87777444322222221.........2222211112222 PP TCP 89 ......kaaksaa 95 ++++++ Do001523.1 159 amvdggEESPAKR 171 3344332222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.381	71	125	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.0E-30	71	164	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:0048364	Biological Process	root development
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MEAQAQDRAE EAEAARQHVG AGGVGVAAAA AAAAGMAMGA IPMHGFMVPK PEPVEYFGGM 60 AMVRSKPPAR NRDRHTKVEG RGRRIRMPAA CAARIFQLTR ELGHKSDGET IRWLLQQSEP 120 AIIAATGTGT VPAIATTVDG VLRIPTQSSS SSSSPSALAM VDGGEESPAK RRRKLQPTRA 180 AAGASPLATA APAAYYPVIA DPLLQGTAGA AISVPSGLAP ITASGAPQGL VPVFAVPATG 240 SPVGGGGGSR MIPQATAVWM VPQPGAAAGG AAAQPAQFWA IQSAPQLINL AGAQAAAVFP 300 TAVNVADYQQ QQTMSHNSNS EQQHPGSGFH EQHRGGRGDV DHPEEDEDDD DEEPVSDSSP 360 EE

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MEAQAQDRAE EAEAARQHVG AGGVGVAAAA AAAAGMAMGA IPMHGFMVPK PEPVEYFGGM  60
AMVRSKPPAR NRDRHTKVEG RGRRIRMPAA CAARIFQLTR ELGHKSDGET IRWLLQQSEP  120
AIIAATGTGT VPAIATTVDG VLRIPTQSSS SSSSPSALAM VDGGEESPAK RRRKLQPTRA  180
AAGASPLATA APAAYYPVIA DPLLQGTAGA AISVPSGLAP ITASGAPQGL VPVFAVPATG  240
SPVGGGGGSR MIPQATAVWM VPQPGAAAGG AAAQPAQFWA IQSAPQLINL AGAQAAAVFP  300
TAVNVADYQQ QQTMSHNSNS EQQHPGSGFH EQHRGGRGDV DHPEEDEDDD DEEPVSDSSP  360
EE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do001523.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008664491.3	1e-175	transcription factor PCF2
Swissprot	A2YXQ1	1e-151	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	1e-151	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A1E5W1N5	0.0	A0A1E5W1N5_9POAL; Transcription factor PCF2
STRING	Pavir.Fa00111.1.p	1e-167	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-42	TCP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]