PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV47464.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | TCP | ||||||||
Protein Properties | Length: 249aa MW: 26992 Da PI: 9.4284 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108.7 | 8.9e-34 | 28 | 110 | 2 | 83 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 a+k+++++++h kv+gR+RR+R++a+ aar+F+L++eLG+++d++ti+WLlqqa+p+i ++tgt++ +as+ a+ s+s+++ KZV47464.1 28 APKRTSNKDRHKKVEGRGRRIRIPALSAARIFQLTRELGHKTDGETIQWLLQQAEPSIFAATGTGTVPASAIaGAGCSVSEQG 110 789*************************************************************9999966652222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-28 | 32 | 163 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.104 | 34 | 88 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MEHKSSKDQL PSTSKEKQED ETRKKQLAPK RTSNKDRHKK VEGRGRRIRI PALSAARIFQ 60 LTRELGHKTD GETIQWLLQQ AEPSIFAATG TGTVPASAIA GAGCSVSEQG SSVSSALYSR 120 LSETVAGMGI RGNFSLSEDF LGRTVGVWPY LTSFGSGILQ NPNVLSSNPG NLHISKVGFQ 180 GLEFPGPISS IHQAPGLELG LSQEGNIGGI NLQGFSQLYQ QMAQNGDYNN RSNNHQERDH 240 PKDNSHESP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV47464.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071244.1 | 1e-115 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 1e-55 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A2Z7CS16 | 0.0 | A0A2Z7CS16_9LAMI; Uncharacterized protein | ||||
STRING | XP_006484165.1 | 2e-75 | (Citrus sinensis) | ||||
STRING | XP_006437974.1 | 2e-75 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 5e-55 | TCP family protein |