PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca34377.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GRAS
Protein Properties Length: 601aa    MW: 66040.9 Da    PI: 5.3583
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca34377.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.66.7e-1362355941374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAea++++++ la+al++++  la++++ +m+++a+yf+eALa+r+++    +++++p+ +++    s+ l+++  f++++P+lkf+h+taN
  Dca34377.1 235 LVHTLMACAEAIQQENMGLAEALVKQIGFLATSQAGSMRKVATYFAEALARRVYK----ICSSVPAFDDN---LSDMLQMR--FYDTCPYLKFAHFTAN 324
                 689****************************************************....88888888887...88887665..**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaI ea++g+++vH+iDf+++qG+QWpaL+qaLa Rpegpp++R+Tg+g+p+++++++l+e+g++La+fA++++++fe++ +va++l+dle   L++kp
  Dca34377.1 325 QAIFEAFSGKKKVHVIDFSMNQGMQWPALMQALALRPEGPPTFRLTGIGPPAPDNSDRLQEVGWKLAQFADQIHIKFEYRGFVANSLTDLEAGLLDLKP 423
                 *************************************************************************************************** PP

        GRAS 199 .gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                   E++aVn+vl+lhrll +++++e+    vL ++k+++P +++vveqea+hn++ F++rf eal+yys++fdsle+    e++e++++ +++lgr+i+n
  Dca34377.1 424 eSETVAVNSVLELHRLLGRPGAVEK----VLGMIKEVNPVILTVVEQEANHNGPVFVDRFNEALHYYSTMFDSLETC---ENNEDKMMTEVYLGRQICN 515
                 9**********************99....***********************************************9...899999999999******* PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 vvac g +r+erhetl++Wr r+++a F+pv+l+++a +q+++ll+ ++ +dgy vee++g+l+lgW++rpL+++SaW+
  Dca34377.1 516 VVACDGVDRVERHETLAQWRTRFNSAEFSPVHLGSNAFNQVRMLLEYFAgGDGYGVEEHDGCLMLGWHNRPLITTSAWQ 594
                 ******************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011295.1E-2831106No hitNo description
PfamPF120411.3E-293199IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098565.189209573IPR005202Transcription factor GRAS
PfamPF035142.3E-133235594IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MKREHPLDNP AAGAAGKSKM KEEAQNDAGV DELLAVLGYK VRSSDMDEVA NKIQLLEAVI  60
GNNAHESNGF SNLASDKVHY NPSDLSTWLE SMLSEFNPSI TFPLHDPPLL SVTATSSSSV  120
KFEDLHHVVA PVDLLFSDYD LKAIPGKAIL SPPPPPPQQQ SQSSGEVVNN NNNMSKGSCL  180
VSEDSSSAAK RMKLSNYGGS VTTTAVATAA VNVNNTAALA RPLVVLDPQE NGIRLVHTLM  240
ACAEAIQQEN MGLAEALVKQ IGFLATSQAG SMRKVATYFA EALARRVYKI CSSVPAFDDN  300
LSDMLQMRFY DTCPYLKFAH FTANQAIFEA FSGKKKVHVI DFSMNQGMQW PALMQALALR  360
PEGPPTFRLT GIGPPAPDNS DRLQEVGWKL AQFADQIHIK FEYRGFVANS LTDLEAGLLD  420
LKPESETVAV NSVLELHRLL GRPGAVEKVL GMIKEVNPVI LTVVEQEANH NGPVFVDRFN  480
EALHYYSTMF DSLETCENNE DKMMTEVYLG RQICNVVACD GVDRVERHET LAQWRTRFNS  540
AEFSPVHLGS NAFNQVRMLL EYFAGGDGYG VEEHDGCLML GWHNRPLITT SAWQLSKKTR  600
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6123059314378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681882.10.0PREDICTED: DELLA protein GAI
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A1Q2T8310.0A0A1Q2T831_DIACA; DELLA protein
STRINGXP_010681882.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein