PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca28910.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 340aa    MW: 35261.5 Da    PI: 6.4442
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca28910.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.8e-10189233554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  Dca28910.1 189 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 233
                 99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.23E-15182243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.526184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15186244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.20E-11188238No hitNo description
PfamPF000101.3E-7189233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MANNQPPEGL GDEFFEQILS VQGYNSGGGG GGGDHQMGGF LGTGSGADHG SSSIFLGLSP  60
GDGPGHGGVN VGLGIGGFSG GMGLGLPLGL NLDHASSSTG GGGGGRGADG GCNVASPASR  120
INESELHLTN LFPAFGHLQS HSIRAPPPSI HVHQTFQGHG LSGPSQTVSH PPAVRPRVRA  180
RRGQATDPHS IAERLRRERI AERMKALQEL VPSCNKTDRA AMLDEIVDYV KFLRLQVKVL  240
SMSRLGGAGA VAQLVSDVPP LAIEGDDVEG GQQAWDKWSN DGTEQQVARL IEQDIGAAMQ  300
FLQSKALCIM PISLASNIFR SHPPPPDPAS MVKPETNPPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835222.11e-141transcription factor UNE12-like
SwissprotO227681e-76UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0K9RX001e-140A0A0K9RX00_SPIOL; Uncharacterized protein
STRINGXP_010674832.11e-139(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.38e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]