PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003466
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 331aa    MW: 37441.3 Da    PI: 4.4708
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003466genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-1857110356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  DCAR_003466  57 KKRRLSINQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 110
                  5568999**********************************************9 PP
2HD-ZIP_I/II128.82.2e-4156148193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk +n++L++e+++L +e++e
  DCAR_003466  56 EKKRRLSINQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKLKNDTLQQENQSLLKEIRE 148
                  69**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-1943114IPR009057Homeodomain-like
PROSITE profilePS5007117.4152112IPR001356Homeobox domain
SMARTSM003894.7E-1755116IPR001356Homeobox domain
PfamPF000461.2E-1557110IPR001356Homeobox domain
CDDcd000864.12E-1657113No hitNo description
Gene3DG3DSA:1.10.10.602.1E-1959119IPR009057Homeodomain-like
PRINTSPR000319.5E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000319.5E-692108IPR000047Helix-turn-helix motif
PfamPF021831.8E-17112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MKRLSSSDSL GALMSICPTT EEGSPGNNHV YSREFQSMLE GLDEEGCVEE MGQISEKKRR  60
LSINQVKALE KNFEVENKLE PERKVKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYGV  120
LKANYDSLKL KNDTLQQENQ SLLKEIRELN SKLGEDNTDK TSEHSVKEEM MVTEDSEKAT  180
DVVLKSPSIE CEDINTEVNF ESFDHQSNNG ITMAADLTTF FPDFKDGSSD DSDSSAILNE  240
DNNSPKAAIS SYATNGVPIR SHQFMPSSMN CFPFSSSTSK AFLGDAQKAC YQPQFVKIEE  300
HNFLSGDESC NFFSDDQDPS LQWYCHDQWN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDARKUROF0.0D26578.1 Daucus carota mRNA for DNA-binding protein (transcriptional regulator), partial cds, CHB6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229276.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6
TrEMBLA0A166I6U80.0A0A166I6U8_DAUCS; Uncharacterized protein
STRINGXP_004288161.11e-134(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.12e-73homeobox protein 6