PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g025602m | ||||||||
Common Name | CISIN_1g025602mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 28439 Da PI: 9.2942 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48 | 2.8e-15 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W + Ed++l d++k +G g W+ I++ g++R++k+c++rw +yl orange1.1g025602m 18 RGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYL 65 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 71 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l ++++k+lG++ W++Ia +++ gRt++++k++w++ orange1.1g025602m 71 RGNFSKDEEDLVIRLHKLLGNR-WALIAGRLP-GRTDNDIKNYWNT 114 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-22 | 10 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.837 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.52E-28 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-12 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-13 | 18 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.69E-8 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 25.609 | 66 | 120 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 69 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-16 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 71 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.62E-11 | 73 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MAGKRKTPCC SKGEGLNRGA WKAVEDKILT DYIKAYGEGK WRHIPKAAGL KRCGKSCRLR 60 WMNYLRPDIK RGNFSKDEED LVIRLHKLLG NRWALIAGRL PGRTDNDIKN YWNTKLSKRV 120 DANHHHHQNR SKVEKKPKTR SSSGVVPRPQ YKKTEKHDAA GGVADDDDDR EAPILFDYVP 180 VQSQCSYGCK EEKSSGSDHE YTVDFDVGGK SLLDLLDANL NNLDDFGHDI YNNMDNHIIQ 240 ASLQSNLGFW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 16 | 122 | 5 | 110 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB573149 | 0.0 | AB573149.1 Citrus unshiu genomic DNA, polyembryony locus, cultivar: Miyagawa wase. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006453008.1 | 0.0 | transcription factor WER isoform X2 | ||||
TrEMBL | A0A067GE22 | 0.0 | A0A067GE22_CITSI; Uncharacterized protein | ||||
STRING | XP_006453008.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 7e-59 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g025602m |