PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g023883m | ||||||||
Common Name | CISIN_1g023883mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TCP | ||||||||
Protein Properties | Length: 277aa MW: 29515 Da PI: 10.1671 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.1 | 6.5e-38 | 28 | 113 | 2 | 86 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as a++s+s+++ns orange1.1g023883m 28 APKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASMLaAAGASVSEQGNSV 113 789******************************************************************77754455555444333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.2E-30 | 33 | 157 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.458 | 34 | 88 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MAENNKPGEI KDFQIMIANK DDSTKKLAPK RSSNKDRHKK VDGRGRRIRM PALCAARIFQ 60 LTRELGHKSD GETIQWLLQQ AEPSIIAATG TGTIPASMLA AAGASVSEQG NSVSAGLHTK 120 IEGLGPGVGS INRANWTMMS ANFGRSQIPS GVWPTINGTG SGFIQNSGQL TSNFGSENLS 180 LSANPKFGFH GIEFPNMNMG LMSFSSMLSG ASHQIPGLEL GLSQDAHVGV MNSQAISQFY 240 QQMGHHRSAS GSLNQQHQHQ QQISDKDDSQ GSGSRQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00641 | PBM | Transfer from Manes.12G007700 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006484165.1 | 0.0 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 2e-74 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A067H2M9 | 0.0 | A0A067H2M9_CITSI; Uncharacterized protein | ||||
STRING | XP_006484165.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4050 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 3e-66 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g023883m |