PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g021068m

Common Name

CISIN_1g021111mg, LOC102618103

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TCP

Protein Properties

Length: 318aa MW: 33912.7 Da PI: 9.5473

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g021068m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.6	2.6e-39	64	147	2	85
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a+ s+s+++ orange1.1g021068m 64 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaAAGGSVSQQG-A 147 789******************************************************************99854444444433.2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.0E-31	69	222	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.016	70	124	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MDPKASKQPS QQEVANFLNI PQQQQQQQPQ QLQQVNMGEN KPAEIKDFQI VIADKEEQTK 60 KQLAPKRSSN KDRHTKVEGR GRRIRMPALC AARIFQLTRE LGHKSDGETI QWLLQQAEPS 120 IIAATGTGTI PASALAAAGG SVSQQGASLT AGLHQKIDDL GSSRTSWGGL VGGNLVGRSH 180 QMPAAGLWPQ PVSGFGFQSS SSSGPSTGNL GTENSNYLQK MGFPGFDLPG TGTATTNMGP 240 MSFTSILGSA SNQQLPGLEL GLSQDGHIGV LNPQTLTQIY QQMGHARVHQ QQQQQQHPQQ 300 QQQAAPVNKD DSQGSGQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00636	PBM	Transfer from Glyma.19G095300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447026.1	0.0	transcription factor TCP20
Refseq	XP_006447027.1	0.0	transcription factor TCP20
Refseq	XP_006470097.1	0.0	transcription factor TCP20
Refseq	XP_015383140.1	0.0	transcription factor TCP20
Refseq	XP_024045908.1	0.0	transcription factor TCP20
Swissprot	Q9LSD5	1e-84	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A067FCK8	0.0	A0A067FCK8_CITSI; Uncharacterized protein
TrEMBL	V4U311	0.0	V4U311_9ROSI; Uncharacterized protein
STRING	XP_006470097.1	0.0	(Citrus sinensis)
STRING	XP_006447026.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4050	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	2e-74	TCP family protein

Link Out ? help Back to Top
Phytozome	orange1.1g021068m
Entrez Gene	102618103

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]