PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g014829m
Common NameCISIN_1g014829mg, LOC102627954
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 419aa    MW: 46819.2 Da    PI: 4.4589
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g014829mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +grWT+eEd++l ++++  G g+W++ ++  g+ R++k+c++rw +yl
  orange1.1g014829m 14 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                       79******************************99************97 PP
2Myb_DNA-binding56.66.1e-1867112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+ T+eE+e+++++++ lG++ W++Ia+ m+ gRt++++k++w+++l
  orange1.1g014829m  67 RGNITAEEEEIIIKLHASLGNR-WSLIASNMP-GRTDNEIKNYWNSHL 112
                        7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.57961IPR017930Myb domain
SuperFamilySSF466895.35E-2811108IPR009057Homeodomain-like
SMARTSM007171.1E-111363IPR001005SANT/Myb domain
PfamPF002498.5E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-211568IPR009057Homeodomain-like
CDDcd001674.55E-81661No hitNo description
PROSITE profilePS5129426.6862116IPR017930Myb domain
SMARTSM007171.8E-1766114IPR001005SANT/Myb domain
PfamPF002491.2E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2569116IPR009057Homeodomain-like
CDDcd001674.15E-780112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDDILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI TAEEEEIIIK LHASLGNRWS LIASNMPGRT DNEIKNYWNS HLSRKIHTFW  120
RPSSEKTLPV KVDVAAAGTG VASDRKAGKK IGSAIMKNKS HSKKDGNINI GTEEIVASIE  180
EDIPLPATPI VASIEEDIPL PATPTLEKET LPSTALVGCM DLDSFAEDKE TTDKIVRSPC  240
RQEDNGLDSS EVREKSVLCS GEETRINNKS MLCRTGEEKE TEILEPFEGI DDAKLCFNDL  300
LDPNEVWTLM EEKDTRVTNT FEGRQIGNNV PTSEELVSAN GDSVSLRSCS SVNSFFDDSN  360
FDWDWENVIQ DYDPQRDENE NVLSWLWESG DKDEPKSHEG EDETDCEKQN AMVAWLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480050.10.0myb-related protein 330 isoform X1
TrEMBLA0A067H7W70.0A0A067H7W7_CITSI; Uncharacterized protein
STRINGXP_006480050.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17349511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.17e-74myb domain protein 111