PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g011830m | ||||||||
Common Name | CISIN_1g007598mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 477aa MW: 52314.6 Da PI: 4.377 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 82.1 | 1.1e-25 | 3 | 65 | 65 | 128 |
NAM 65 dkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dkky +g+r+nrat++gyWk+tgkd++v++ ++++vg+kktLv++ grap+ge+t+Wvmheyrl orange1.1g011830m 3 DKKYGNGSRTNRATEKGYWKTTGKDRPVHH-NTRTVGMKKTLVYHMGRAPHGERTNWVMHEYRL 65 799***************************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 33.748 | 1 | 88 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.75E-33 | 3 | 88 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-11 | 10 | 65 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MLDKKYGNGS RTNRATEKGY WKTTGKDRPV HHNTRTVGMK KTLVYHMGRA PHGERTNWVM 60 HEYRLTDDDL EKAGVAQDTF VLCRIFQKSG SGPKNGEQYG APFIEEEWED DEAVDAALVP 120 GHDVVADELV VSDDAYFETN DLDQNIDVAN QSENAPRHLN FYHGESSNHV EHSRDLSPDN 180 QKPMIGVGAT QHNSELMDAR PVKDEYIDSS NGVNAGGVNY FLNEPYLDAT DNPQFSDGLY 240 LEANDLSSTV EADSQGFDMV EEYLNFFDAN DDNSEYLTFD ASEILGSGDN NSDQVPLTTE 300 VTEVTDQMSM AGQHQVEVHG NDVASTSEQK PDIVKSESDV KYPFLKQASQ MLGNVAAAPA 360 FASEFPTKDA ALRLNSLAHP SSSVHVTAGM IRIRNITLSG SGLDWSVGKN GDMNIVFSFD 420 LSQNVISPSP TSFEPAGNIF SGKTGSVVFR SLWLLLFLWI IILSVGFKIG ACVSAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-24 | 3 | 94 | 83 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-24 | 3 | 94 | 83 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-24 | 3 | 94 | 83 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-24 | 3 | 94 | 83 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-24 | 3 | 94 | 83 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-24 | 3 | 94 | 83 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-24 | 3 | 94 | 83 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-24 | 3 | 94 | 83 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.2812 | 0.0 | callus| flower| fruit| seed| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436535.1 | 0.0 | NAC domain-containing protein 78 isoform X2 | ||||
Refseq | XP_006485308.1 | 0.0 | NAC domain-containing protein 78 isoform X2 | ||||
TrEMBL | A0A067DX67 | 0.0 | A0A067DX67_CITSI; Uncharacterized protein | ||||
STRING | XP_006485307.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006436536.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 1e-105 | NAC domain containing protein 53 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g011830m |