PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g009697m
Common NameCISIN_1g007598mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 529aa    MW: 58750.2 Da    PI: 4.8474
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g009697mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.32.5e-52101371128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        l+pGfrFhPtdeelv +yLk+kv +++l++ + i  +diyk+ePwdLp k ++k+++kewyfFs  dkky +g+r+nrat++gyWk+tgkd+
  orange1.1g009697m  10 LAPGFRFHPTDEELVRYYLKRKVCHRSLRF-NPICVTDIYKSEPWDLPdKsSLKTRDKEWYFFSMLDKKYGNGSRTNRATEKGYWKTTGKDR 100
                        579*************************99.88**************96357888999********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +v++ ++++vg+kktLv++ grap+ge+t+Wvmheyrl
  orange1.1g009697m 101 PVHH-NTRTVGMKKTLVYHMGRAPHGERTNWVMHEYRL 137
                        ****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-626160IPR003441NAC domain
PROSITE profilePS5100556.90210160IPR003441NAC domain
PfamPF023655.0E-2812137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MGREFASTSL APGFRFHPTD EELVRYYLKR KVCHRSLRFN PICVTDIYKS EPWDLPDKSS  60
LKTRDKEWYF FSMLDKKYGN GSRTNRATEK GYWKTTGKDR PVHHNTRTVG MKKTLVYHMG  120
RAPHGERTNW VMHEYRLTDD DLEKAGVAQD TFVLCRIFQK SGSGPKNGEQ YGAPFIEEEW  180
EDDEAVDAAL VPGHDVNIDV ANQSENAPRH LNFYHGESSN HVEHSRDLSP DNQKPMIGVG  240
ATQHNSELMD ARPVKDEYID SSNGVNAGGV NYFLNEPYLD ATDNPQFSDG LYLEANDLSS  300
TVEADSQGFD MVEEYLNFFD ANDDNSEYLT FDASEILGSG DNNSDQVPLT TEVTEVTDQM  360
SMAGQHQVEV HGNDVASTSE QKPDIVKSES DVKYPFLKQA SQMLGNVAAA PAFASEFPTK  420
DAALRLNSLA HPSSSVHVTA GMIRIRNITL SGSGLDWSVG KNGDMNIVFS FDLSQNVISP  480
SPTSFEPAGN IFSGKTGSVV FRSLWLLLFL WIIILSVGFK IGACVSAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-47916619174NAC domain-containing protein 19
3swm_B2e-47916619174NAC domain-containing protein 19
3swm_C2e-47916619174NAC domain-containing protein 19
3swm_D2e-47916619174NAC domain-containing protein 19
3swp_A2e-47916619174NAC domain-containing protein 19
3swp_B2e-47916619174NAC domain-containing protein 19
3swp_C2e-47916619174NAC domain-containing protein 19
3swp_D2e-47916619174NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.28120.0callus| flower| fruit| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root meristem (Ref.1). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436535.10.0NAC domain-containing protein 78 isoform X2
RefseqXP_006485308.10.0NAC domain-containing protein 78 isoform X2
SwissprotQ84K001e-161NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A067E9K80.0A0A067E9K8_CITSI; Uncharacterized protein
STRINGXP_006485307.10.0(Citrus sinensis)
STRINGXP_006436536.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-149NAC domain containing protein 53
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]