PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g009389m | ||||||||
Common Name | CISIN_1g007598mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 537aa MW: 59500 Da PI: 4.8396 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.3 | 2.5e-52 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 l+pGfrFhPtdeelv +yLk+kv +++l++ + i +diyk+ePwdLp k ++k+++kewyfFs dkky +g+r+nrat++gyWk+tgkd+ orange1.1g009389m 10 LAPGFRFHPTDEELVRYYLKRKVCHRSLRF-NPICVTDIYKSEPWDLPdKsSLKTRDKEWYFFSMLDKKYGNGSRTNRATEKGYWKTTGKDR 100 579*************************99.88**************96357888999********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v++ ++++vg+kktLv++ grap+ge+t+Wvmheyrl orange1.1g009389m 101 PVHH-NTRTVGMKKTLVYHMGRAPHGERTNWVMHEYRL 137 ****.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-62 | 6 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.902 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-28 | 12 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MGREFASTSL APGFRFHPTD EELVRYYLKR KVCHRSLRFN PICVTDIYKS EPWDLPDKSS 60 LKTRDKEWYF FSMLDKKYGN GSRTNRATEK GYWKTTGKDR PVHHNTRTVG MKKTLVYHMG 120 RAPHGERTNW VMHEYRLTDD DLEKAGVAQD TFVLCRIFQK SGSGPKNGEQ YGAVDAALVP 180 GHDVVADELV VSDDAYFETN DLDQNIDVAN QSENAPRHLN FYHGESSNHV EHSRDLSPDN 240 QKPMIGVGAT QHNSELMDAR PVKDEYIDSS NGVNAGGVNY FLNEPYLDAT DNPQFSDGLY 300 LEANDLSSTV EADSQGFDMV EEYLNFFDAN DDNSEYLTFD ASEILGSGDN NSDQVPLTTE 360 VTEVTDQMSM AGQHQVEVHG NDVASTSEQK PDIVKSESDV KYPFLKQASQ MLGNVAAAPA 420 FASEFPTKDA ALRLNSLAHP SSSVHVTAGM IRIRNITLSG SGLDWSVGKN GDMNIVFSFD 480 LSQNVISPSP TSFEPAGNIF SGKTGSVVFR SLWLLLFLWI IILSVGFKIG ACVSAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 9e-48 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-48 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-48 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-48 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-48 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-48 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-48 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-48 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.2812 | 0.0 | callus| flower| fruit| seed| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root meristem (Ref.1). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436535.1 | 0.0 | NAC domain-containing protein 78 isoform X2 | ||||
Refseq | XP_006485308.1 | 0.0 | NAC domain-containing protein 78 isoform X2 | ||||
Swissprot | Q84K00 | 1e-155 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | A0A067E8M7 | 0.0 | A0A067E8M7_CITSI; Uncharacterized protein | ||||
STRING | XP_006485307.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006436536.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 1e-150 | NAC domain containing protein 53 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g009389m |