PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g007598m
Common NameCISIN_1g007598mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 597aa    MW: 66622.4 Da    PI: 4.6242
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g007598mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.13e-52101371128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        l+pGfrFhPtdeelv +yLk+kv +++l++ + i  +diyk+ePwdLp k ++k+++kewyfFs  dkky +g+r+nrat++gyWk+tgkd+
  orange1.1g007598m  10 LAPGFRFHPTDEELVRYYLKRKVCHRSLRF-NPICVTDIYKSEPWDLPdKsSLKTRDKEWYFFSMLDKKYGNGSRTNRATEKGYWKTTGKDR 100
                        579*************************99.88**************96357888999********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +v++ ++++vg+kktLv++ grap+ge+t+Wvmheyrl
  orange1.1g007598m 101 PVHH-NTRTVGMKKTLVYHMGRAPHGERTNWVMHEYRL 137
                        ****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-566147IPR003441NAC domain
PROSITE profilePS5100553.01310208IPR003441NAC domain
PfamPF023656.1E-2812137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MGREFASTSL APGFRFHPTD EELVRYYLKR KVCHRSLRFN PICVTDIYKS EPWDLPDKSS  60
LKTRDKEWYF FSMLDKKYGN GSRTNRATEK GYWKTTGKDR PVHHNTRTVG MKKTLVYHMG  120
RAPHGERTNW VMHEYRLTDD DLEKAGVAQV RSWRTLFGIC VFICIVLVFD QLSLSLFFFL  180
VFLQLVEIDW LLVVLGKDTF VLCRIFQKSG SGPKNGEQYG APFIEEEWED DEAVDAALVP  240
GHDVVADELV VSDDAYFETN DLDQNIDVAN QSENAPRHLN FYHGESSNHV EHSRDLSPDN  300
QKPMIGVGAT QHNSELMDAR PVKDEYIDSS NGVNAGGVNY FLNEPYLDAT DNPQFSDGLY  360
LEANDLSSTV EADSQGFDMV EEYLNFFDAN DDNSEYLTFD ASEILGSGDN NSDQVPLTTE  420
VTEVTDQMSM AGQHQVEVHG NDVASTSEQK PDIVKSESDV KYPFLKQASQ MLGNVAAAPA  480
FASEFPTKDA ALRLNSLAHP SSSVHVTAGM IRIRNITLSG SGLDWSVGKN GDMNIVFSFD  540
LSQNVISPSP TSFEPAGNIF SGKTGSVVFR SLWLLLFLWI IILSVGFKIG ACVSAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-46613711140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.28120.0callus| flower| fruit| seed| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436535.10.0NAC domain-containing protein 78 isoform X2
RefseqXP_006485308.10.0NAC domain-containing protein 78 isoform X2
TrEMBLA0A067DXK60.0A0A067DXK6_CITSI; Uncharacterized protein
STRINGXP_006485307.10.0(Citrus sinensis)
STRINGXP_006436536.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31922762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-142NAC domain containing protein 53