PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.112530.1
Common NameCsa_1G032440
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 481aa    MW: 53130.4 Da    PI: 7.7705
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.112530.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-1759103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+
   Cucsa.112530.1  59 REKWTEEEHQRFLEALKLYGRG-WRQIKEHVG-TKTAVQIRSHAQKF 103
                      789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.62E-1653107IPR009057Homeodomain-like
PROSITE profilePS5129421.97154108IPR017930Myb domain
TIGRFAMsTIGR015573.7E-1657106IPR006447Myb domain, plants
SMARTSM007179.0E-1358106IPR001005SANT/Myb domain
PfamPF002497.9E-1559102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-95999IPR009057Homeodomain-like
CDDcd001675.56E-1161104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MGVQEKNEGT LSNGSIAANN GLSNDGAQLD PLMRVSSLSS YGNESALKVR KPYTISKQRE  60
KWTEEEHQRF LEALKLYGRG WRQIKEHVGT KTAVQIRSHA QKFFSKVVRE SSGSNESSIN  120
PIEIPPPRPK RKPLHPYPRK AVDSLKAISV ARESERSPSP NLSLAEKETH SPTSVLTAFS  180
SDDQISAVSE QHNRCPSPIS QAVDMQPTRS SPVRKGELYL QSIVGEEKGM LSLESSSERF  240
PEEFLTLKFK PGSASKKVDN KLHSPVKSIK LFGRTVMVTN DKQPSPLDFE VTETLTFEDD  300
SKSECKVYAE NSVEMLTSKH MDVSLALGMD NNGDLNMSPG GAPSLTLGKQ NRSVPYVKAL  360
PNASQTCWSL YQTVPYFYLA PSDQTSTGTS TDHIMEERIQ NDNSQESSFA DSCSGSPRKD  420
QNETQSPEVE CQEPCLVGRG NANESKKGFV PYKRCLAQRD TSSALIVSEE RESRRARVCS  480
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011649662.10.0PREDICTED: protein REVEILLE 7-like
TrEMBLA0A0A0LSL20.0A0A0A0LSL2_CUCSA; Uncharacterized protein
STRINGXP_004137575.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.17e-48MYB_related family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]