PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20858.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 386aa    MW: 43516.9 Da    PI: 6.9773
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20858.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++ + g+ R+ k+c++rw +yl
        PK20858.1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTHTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.12.7e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
        PK20858.1  67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.619965IPR017930Myb domain
SuperFamilySSF466892.62E-3011108IPR009057Homeodomain-like
SMARTSM007175.8E-141363IPR001005SANT/Myb domain
PfamPF002491.5E-161461IPR001005SANT/Myb domain
CDDcd001671.15E-111661No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2465116IPR009057Homeodomain-like
SMARTSM007174.0E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.21666116IPR017930Myb domain
PfamPF002491.1E-1367112IPR001005SANT/Myb domain
CDDcd001671.32E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLRKLH  120
TGHDGQSHDE FSTDNNSHQI SKGQWERRLQ TDIHMAKQAL CEALSLDKPI DHHNHNLGES  180
KPSITTTTCF HTSCDHQDHD HKNTTKSHQP LSYASNAENI ARLLESWMKN SPKSGQTNSN  240
PTRDLLQNPV AYQPNNNGTC TNTTYSSSSE GAQSGTTTPD HNHHNNHRQH NNQATANNTN  300
FEYSLFSFNS STASESLSAD ETANLTPERA TSTLCFQDES KPHNTKIEEP VQAPLTLLEK  360
WLLDDGSAQG HEDLINMSLE DSAALF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00579DAPTransfer from AT5G62470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010091514.11e-173myb-related protein 306
SwissprotP813921e-117MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2P5C8K30.0A0A2P5C8K3_PARAD; MYB transcription factor
STRINGXP_010091514.11e-173(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-112myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]