PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK14040.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 472aa MW: 48849.1 Da PI: 6.1262

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK14040.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.7e-12	272	317	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq PK14040.1 272 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 317 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.89E-17	265	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.56E-13	265	321	No hit	No description
PROSITE profile	PS50888	17.39	267	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-16	269	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-9	272	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	273	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MQGLNSLLNS SSSQISLQEL QGGGQQGSQI HGSGHFESGS THDDFLEQML STLGQPSCSW 60 ADLGPNNSGK SPWDHTTTTL PINVSSSNKP CRDLTDETAP SGHENVAFPN YEESVNLTSK 120 FRNHQISTGT GASKSAVAAA TAMMLQQQLM MSRGIPGSAG SGAGESGLIP MPLSLGNGDF 180 DRSQNDVVDG SSFKSPNPGG DGSVQALFNG FTGSLPGSGQ APNQFHHPQS QNFGAQGGTM 240 SQTPAPSGSS GAAAAQPRPR VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT 300 DKASMLDEII DYVKFLQLQV KVLSMSRLGG AAAVAPLVAD MSSEGGGDCI QANGNGGGLG 360 RNATNGNQTA SSSNDAMTVT EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS LATAISTATC 420 HTRNPMMNNP QMPSNGEGPS SPSMSVLTVQ SATMGNGVTD GSGKDAASVS KP

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MQGLNSLLNS SSSQISLQEL QGGGQQGSQI HGSGHFESGS THDDFLEQML STLGQPSCSW  60
ADLGPNNSGK SPWDHTTTTL PINVSSSNKP CRDLTDETAP SGHENVAFPN YEESVNLTSK  120
FRNHQISTGT GASKSAVAAA TAMMLQQQLM MSRGIPGSAG SGAGESGLIP MPLSLGNGDF  180
DRSQNDVVDG SSFKSPNPGG DGSVQALFNG FTGSLPGSGQ APNQFHHPQS QNFGAQGGTM  240
SQTPAPSGSS GAAAAQPRPR VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT  300
DKASMLDEII DYVKFLQLQV KVLSMSRLGG AAAVAPLVAD MSSEGGGDCI QANGNGGGLG  360
RNATNGNQTA SSSNDAMTVT EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS LATAISTATC  420
HTRNPMMNNP QMPSNGEGPS SPSMSVLTVQ SATMGNGVTD GSGKDAASVS KP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	281	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019368.1	0.0	transcription factor bHLH66
Swissprot	Q9ZUG9	2e-93	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A2P5F3C2	0.0	A0A2P5F3C2_TREOI; Basic helix-loop-helix transcription factor
STRING	VIT_11s0037g00040.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	3e-60	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]