PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10023532m | ||||||||
Common Name | CARUB_v10023532mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 352aa MW: 36916.2 Da PI: 6.5856 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.8 | 1.4e-11 | 153 | 198 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+ + K +Ka++L + ++Y+k Lq Carubv10023532m 153 HSIAERLRRERIAERMKALQELVPNgN------KTDKASMLDEIIDYVKFLQ 198 99***********************55......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.59E-13 | 146 | 202 | No hit | No description |
SuperFamily | SSF47459 | 4.32E-17 | 146 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.409 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-16 | 150 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.2E-9 | 153 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-14 | 154 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MMNSSSLLTP FSSSSSHIQT PTTTTFDHED FLDQIFSSTP WPSVVDDAHP PPPTDGFHSH 60 DVDSRNQQIM MMPLNDGSSV HALYNGFSSS GSLPNFHIPQ GSGGGMMNQE RQTQTQTQPQ 120 ASASTATGGT VAAAPPQSRT KVRARRGQAT DPHSIAERLR RERIAERMKA LQELVPNGNK 180 TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GAASVSSQIS EAGGSHGNAS SAMAGGNQTA 240 GNSSNDSSIT MTEHQVAKLM EEDMGSAMQY LQGKGLCLMP ISLATAISTA TCHTRNPLIP 300 GAADVGVNVP SSPNLSGMTI QSTNTTMGKG NGVTEGSLSI AVKEAVSVSK P* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 157 | 162 | RLRRER |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10023532m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK176370 | 0.0 | AK176370.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-07-J21. | |||
GenBank | BT026512 | 0.0 | BT026512.1 Arabidopsis thaliana At2g24260 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294501.1 | 0.0 | transcription factor bHLH66 isoform X1 | ||||
Swissprot | Q9ZUG9 | 0.0 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | R0HCZ6 | 0.0 | R0HCZ6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006294501.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3042 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 0.0 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10023532m |
Entrez Gene | 17888434 |
Publications ? help Back to Top | |||
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